Notothenia coriiceps (black rockcod): 104951982
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Entry
104951982 CDS
T04920
Symbol
hmha1
Name
(RefSeq) LOW QUALITY PROTEIN: minor histocompatibility protein HA-1
KO
K26415
Rho GTPase-activating protein 45
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104951982 (hmha1)
Membrane trafficking [BR:
ncc04131
]
Others
Rho GTPase associated proteins
Rho GTPase-activating proteins
104951982 (hmha1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGAP
C1_1
FCH
Motif
Other DBs
NCBI-GeneID:
104951982
NCBI-ProteinID:
XP_010777034
UniProt:
A0A6I9NH60
LinkDB
All DBs
Position
Unknown
AA seq
1326 aa
AA seq
DB search
MCDSSNRRKTDRQRPWIKHSRDGTELPLRHTAPKWRVGGWVGGLYVKLKGVGMDGKGTLK
MFHRKKRELIKTPSISKKSRAGSPGPQSSAPANGDRAVGGRRSMLRRVGKGSYNPYSTSQ
RVKKAEAKSKDRLDILPSKQNVWLKQLSILQEQPRKDAADITLSSSPLSSASTLTPTSAG
LQDSSASCPGTPSIHHSKLVAMQGVGSPVSTLKRPTALSRHASAAGFPLQSWVFSKGQGK
TASAPTTPSDGPESTAIEVEDIPALLRDVARFAEAVEKLKDVVLTEGKDSQRPVAHECLG
EVLRVLRQVINTYPLLNTVEILTAAGKLISKVKGFHYEACNEADKNDFEKAIETIAVAFS
SNVSELLIGEVDSSTLLSQLPTEKSRSLENLYASTGHGADSGHFRNDLHYMGRAEEVDVI
LQQSEGGVDSALLYAKTISKYMKDLISYVEKRTSLEMEFSKGLQRLYHSCKHSITHPQMP
LFSIYSLALEQDQEQSVGLQLANTTLHTQTFIQPLMQRKQEHEKRRKEIKEHWIRAKRKL
MECEANLRKAKQAFMVRCEEYEKAKTAACRAEEEGGGSTAKSVEKKKRVEEEARNKSDEA
EATYRNCIADATTQQQELEHTKVTVLRTLQDVIKQSDQTLRSATISYYQLMHMQTVALPV
HYRLCVRAEAVRPGPSIKSISRITNMQFQIKTLRKPRPADQGIDSFQHGQSYHAVWNAAA
GDSRDAEAQRKRQGHKSWGSTVSDDSVGGEAGLESPTASSSDVSKIARTSSTGTMSSNED
ADEKDGNMTSFESPNMNGMDPDVVVSTRPFRNVGLSKAAHTHRLRKLRTPSKCRECDSYV
YFQGAECEECFLACHKRCLETLAIQCGHKKLQGRLQLFGRDFSQVASCASDGIPFIITKC
ISEIERRALKMKGIYRVNGVKTRVEKLCQAFENGKELVELSQCSPHDISNVLKLYLRQLP
EPIMLFRLYNSLMGLAKESMQGEADTAEGEEVESNSINPAVGKGPELVDLGPNSDPEVLV
LVDKLKELLKEPPKANVATLRYIIRHLRRIAELEEDNKMSPSNLGIVFGPSLMRPRPTGA
TISLSSLVDYPHQARIIECLIVFYSSIFQSKTSQTHKNIRSDSSSAQQMGQEDIHPSDKV
CAADEKIESAADGEEPNKPESEKLEEGCGSSLGSLGSSEQLPDSDSEQDDSSQGAAPPRS
LVTQESEVSMDDEPLSYRDSLDLSSQSATLTEPEPEPDQDQEETPDKVEPPALPVSGPPD
EDTATEEELSVSLAELNVNQSNNNNKTNNNNYPCSPVLSLSGHPLSRLSGTKLPLTRNRD
SEPEFV
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgacagcagcaacaggaggaagacagacagacagcgaccgtggatcaaacactcc
agggatggcaccgagctcccgctgagacacacagcacccaagtggcgagtcggggggtgg
gtggggggtttgtacgtgaaactcaaaggagtcgggatggacggcaaaggcacgctgaag
atgttccacaggaagaaacgggaactgatcaaaacgccatccatctcgaagaagagccga
gcaggaagccccgggccacagagcagcgccccggccaatggggacagagctgtaggggga
agaaggagcatgctgagacgggtcggtaagggcagctacaacccttactctaccagtcag
agagttaagaaagctgaggcaaagagcaaggacagactggacatactgcccagcaagcaa
aacgtgtggcttaagcagctctccatcctgcaggagcagcctcggaaagatgcagctgac
atcaccctctcctcctcacccttatcctccgcttcaactctcaccccgacctctgccggg
cttcaggactcctccgcctcctgccccgggacccccagcatccaccacagcaagctggtg
gccatgcagggggtgggctctccagtgtccaccctgaagaggccgactgcactgagccga
cacgccagtgctgcaggtttccctctccagtcctgggtgttctctaaaggccaggggaag
acagcctccgcccccaccactccgtctgatggtccagagagcacggccatcgaggtggag
gacatccccgccctgctgagggacgtggcccgcttcgcagaggctgtggagaaactgaag
gatgtggtgctgactgaaggtaaggacagtcagcgtcccgtggctcacgagtgtttgggg
gaggtcctccgagtgctgcgtcaggtcatcaacacgtaccctctgctcaacaccgtggag
atcctcaccgccgccggcaagctcatatccaaggtcaaaggtttccactatgaggcttgt
aacgaggcagataaaaatgactttgagaaggccattgaaaccatcgcagtcgcttttagc
agcaatgtgtctgagctgctgatcggagaggtggacagcagcacgctgctctcccagctg
cccactgagaagagcaggtcgctggagaacttgtacgcttcgacaggccatggggcagac
agcggacacttcaggaacgacctgcattacatgggcagagctgaggaagtggatgtgatc
ctgcagcagagcgagggaggcgtggactccgctctgctctacgccaaaaccatctccaaa
tacatgaaggacctgatcagctacgtggagaagagaacttccctggagatggagttctcc
aaaggcctccagagattgtaccattcctgcaaacacagcataacgcatccccagatgccg
ctcttctccatctactctctggctctggagcaggaccaggagcagagtgtggggctgcag
ctggccaacaccaccctgcacacacagaccttcatccagcctctgatgcagcgtaaacag
gagcatgagaagagacggaaggagatcaaggagcactggattcgagctaagaggaaactg
atggagtgtgaggcgaacctgcgtaaagctaagcaagcctttatggtccgctgtgaggag
tacgagaaggccaaaacagcagcctgccgcgctgaggaggaaggaggagggtctacggca
aagtctgtggagaagaagaaacgagtggaggaggaggcgcgcaacaagtcagacgaggcg
gaggccacctaccggaattgtatagcagacgccaccacccagcagcaggagctggagcac
acaaaggtcacagtgctgagaacactacaggacgtcatcaaacagagcgaccagaccctg
cgctcggcgaccatctcgtactaccagctcatgcacatgcagaccgtggccttgccggtc
cactacagactctgtgtgagagcagaagctgtacgacccgggcccagcataaagagcatc
agtcggatcaccaatatgcagtttcaaattaaaaccttaaggaagccacggccagcagac
caaggaattgacagtttccaacacggacagtcctaccacgcagtgtggaacgcagcagca
ggagacagcagagacgccgaggctcagcgcaagaggcagggacataagtcttggggttca
acagtgagcgacgacagtgttggaggagaggcgggtctagagtcgcctactgccagctcc
agtgacgtcagtaaaattgctcggacgtcatccactgggacaatgtcgtccaatgaggac
gcagatgagaaagacgggaatatgacttcatttgaatctccaaacatgaacggcatggac
cctgacgtggtggtgtccaccagacctttccgtaacgtcggcctctctaaagcagcacat
acccaccggctgaggaagctacgcactccgtcaaagtgccgcgagtgtgacagctacgtt
tacttccagggggccgagtgtgaggagtgtttcctggcgtgtcacaagcgctgtctggag
actctggccatccagtgcggtcacaagaagctgcagggccgtctgcagctgttcggcagg
gacttctctcaggtagccagctgtgccagcgacggcatccccttcatcatcactaagtgc
atctctgagatagagagacgggcgctcaagatgaagggcatctacagggtgaacggggtg
aagactcgggtggagaagctgtgtcaggcctttgagaacggcaaggagctggtggagctg
tcccagtgttcaccgcatgacatcagcaacgtgctcaagctttacctccgacagctgcca
gagcccatcatgctgttccgcctgtacaacagtctgatgggtttggcgaaggagagtatg
cagggagaggctgacacagcggagggagaggaggtggagtctaacagcatcaacccggcg
gtgggcaaggggcccgagctggtggacctgggccccaacagcgaccccgaggtgctggtc
ctggtggacaagctgaaggagcttctgaaggagccgcccaaagctaacgtcgctacgcta
cgctacatcattcgccacctccggaggattgcagagctggaggaggacaacaagatgagt
cccagtaacctgggtattgtgttcggcccctccctgatgcgcccccgtcccaccggagcc
accatctccctctcctctctggtcgattacccccaccaggctcgcatcattgagtgtctc
atcgtcttctattcatccatcttccagtccaaaacctctcagacacacaaaaacatccgc
tcagattcctcctctgcccagcagatggggcaggaggatattcatccctctgataaggtc
tgtgctgcagatgaaaagattgagagcgctgctgatggagaggagccaaataaaccagaa
tctgagaagttggaggaggggtgtggaagttctttagggtctctggggtccagtgagcag
ctccctgactccgactcagagcaggacgacagcagtcagggggccgcgcccccccgcagc
ctggtgacgcaggagagcgaggtgagcatggacgacgagccgctaagctacagggacagc
ctggacctgtcgagccagtctgcaacgctgaccgaaccagaaccagaaccagaccaggac
caggaagaaacccccgacaaagtcgagcctcctgccctgccagtcagcggacccccagat
gaagacacagcgacagaggaggagctgagcgtctctctggccgagctcaacgtgaaccag
tccaacaacaacaacaaaaccaacaacaacaactacccctgctcccccgttcttagcttg
tcggggcatccactgtcacgtttgtctggaacgaaattacccctgaccaggaacagggac
agcgagccagagtttgtctga
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