Notothenia coriiceps (black rockcod): 104952201
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Entry
104952201 CDS
T04920
Symbol
prpf6
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104952201 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104952201 (prpf6)
Spliceosome [BR:
ncc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104952201 (prpf6)
Complex C
U5 SnRNP specific factors
104952201 (prpf6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
PRP6_TPR
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_2
Suf
CFAP70_TPR_C
HAT_Syf1_CNRKL1_C
TPR_8
TPR_1
ARM_TT21_C
FAT
TPR_15
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
104952201
NCBI-ProteinID:
XP_010777270
UniProt:
A0A6I9NR69
LinkDB
All DBs
Position
Unknown
AA seq
976 aa
AA seq
DB search
MASSAKQGPKIVSKSSAGGAGAAGAGGGLPVMPLASPLMGKKKKPFLGMPAPLGYVPGLG
RGATGFTTRSDIGPARDANDPVDDRHAAPGKRTVGDQMKKKEEDEEDLNDTNYDEFNGYA
GSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKDEIEKYRMERPKIQQQFSDL
KRKLSGMSEEEWLSIPEVGDARNKRQRNPRNEKLTPVPDSFFSKHLQTGDKHTTVDPLQG
LAGLNTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGPDSVVNPKGYRXLIL
TPMIPTHGGDISDIKKVLVVCLLKSVRETKSLISPPAWIAVCQVWRKVTGKLQVARTRXS
XKGTEMCPKEMWWLEAAPRLQPGDTAEAVCAQAVRQPARSAVRHLHQSCQSWRTDMRRRN
AVLQERLLENGVTKSSSTVGRPSCGAEEPEDARIMLRQSCECCPTSVELLAGALARLETY
ENAPSCPEQSFGETFPTDRPHLGSTAAQAGTARPKVQMVQKIAGPSTSLRANGVEINREQ
WIQDAEECDKAGSVATCQAVIRDVIGIGIEEEDRKHTWMEDADSCVSHGALECARAIYAH
ALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVP
AARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLE
WVLGNIDAAQELCTEALKHYEDFPKLWMMRGQIEEQGENMDKAREAYNQGLKKCPHSSGL
WWLLSRLEERVGQLTRARAILEKARLKNSQSPELWLESVRLEFRAGLKNIANTLMAKALQ
ECPNSGILWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFL
RTVKIEPDLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKK
TGEILAGVAGKIKNTF
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggctagctccgcaaaacaaggacctaaaattgtctccaaatcctctgcgggaggcgcc
ggggcggcgggggccggcggcgggctcccggtgatgcccctcgcctctccgctcatgggg
aagaagaagaagccgtttctggggatgcccgctccgctgggctatgtgcctggtctgggc
agaggcgcaactggtttcaccacccgatctgatattggtcctgctcgtgatgcaaacgat
ccagtggatgaccgacatgcagctccagggaagaggacggttggggaccaaatgaaaaag
aaagaggaggatgaagaagatctgaacgacacaaactacgatgagtttaatggatacgct
ggtagcttgttctccagtgggccctatgagaaggatgatgaagaagcagatgctatatat
gcggcattggacaagaggatggatgagagacgcaaagaaagaagggagctgagggaaaag
gacgaaatcgagaaataccgtatggaacgacccaaaatccagcagcagttttctgatctt
aagagaaagttgtcagggatgtcagaggaggagtggctgagcatccctgaggtgggagat
gccaggaataagcgccagagaaatccccgaaatgagaaactcacccctgtccccgacagc
tttttctccaaacatctgcagactggagacaagcataccacagttgaccctctgcaaggg
ctggcaggtctgaacacgccctacccgggaagcatgacacccgggacaggagagctggac
atgaggaaaatcggtcaggccaggaacacacttatggatatgaggctcagccaggtatct
gactcagtgagtggcccagacagtgtggtgaatcctaagggttaccgctgactgatctta
actccgatgatccctacacatgggggagacatcagtgacatcaaaaaagtgctcgtcgtc
tgcctattgaaatcagtgagggagaccaaatccctcatcagcccgcctgcctggatcgcc
gtctgccaggtctggaggaaggtgacgggcaaactgcaggtggccaggacacgctgatca
tgaaaaggcacagagatgtgtcctaaagagatgtggtggctcgaggccgccccaagactc
cagcccggcgacacagctgaagccgtgtgtgcccaggctgtccgccaacctgcccgcagt
gccgtccggcatctacatcagagctgccagagctggagaacagacatgaggcgaagaaac
gccgttcttcaggaaaggctccttgagaatggtgtgaccaagtccagttcgactgtggga
agaccgtcttgtggagctgaggaaccagaggatgccaggatcatgctcaggcagagctgt
gagtgttgccctactagtgtggagctgctggctggcgccctggcccgtttagagacgtac
gagaacgcaccgtcgtgtcctgaacaaagcttcggagaaacattccccaccgatcgccca
catcttggatcaactgctgcccaagctggcaccgcgaggccaaaagttcagatggtacaa
aagatcgcagggccatccacttctctacgtgccaacggtgtggagatcaacagagagcag
tggatacaggatgcagaggagtgtgacaaagcaggcagcgtggctacctgccaggccgtg
ataagagacgtcatagggattggcattgaggaggaagatcgcaaacacacctggatggaa
gatgccgatagctgtgtttcccatggagcactggagtgtgccagagccatctatgcccac
gctctgcaggtgttccccagtaaaaaaagcgtgtggcttagagctgcctactttgagaaa
aataacggcaccagggagtccctggaggccctgctccaaagagccgtggctcactgtccc
aaagcagaggtgctgtggctgatgggagccaagtccaagtggctggctgaggatgttcct
gctgccagaagtattctcgctctggctttccaggcgaacccaaacagtgaagagatctgg
ctggctgctgtcaagctggagtctgagaataacgagtatgaaagagcccgtcgacttcta
gctaaggcccgcagcagtgccccgacagcaagggtgtttatgaagtcggtgaagttggag
tgggtgttggggaacatagacgctgctcaggagctgtgcaccgaggccctgaaacactac
gaggacttccccaaactgtggatgatgagagggcagatagaagagcagggagaaaacatg
gataaggccagagaggcctacaaccaagggttgaaaaagtgtccccactcgagcggcctg
tggtggctgctgtctcgcctggaagagcgagtcggacagctgaccagagccagggccatc
ctggagaaggcccgactcaagaactcccagagccccgagctgtggttggagtcggtcagg
ctggagttcagggccgggcttaagaacatcgccaacacactgatggccaaagccctgcag
gagtgccccaattcaggcatcctgtgggctgaggctgtgtttttggaggccaggccccag
aggaagaccaagagtgtggatgctttaaagaagtgtgaacatgatccccacgtcttgcta
gctgttgccaagttgttttggagtgagcgtaagatcaccaaagccagagagtggttcctg
aggacagtgaagatcgagcctgacctgggagatgcttgggctctcttctacaagtttgag
ctgcagcatggcacagaggaacagcaggaagaggtgcgaaagcgctgtgagaatgcggag
ccccgtcatggagagctgtggtgtgccgagtccaaacacgtcctgaactggcagaagaag
acaggagagatcttagcaggggtagccggcaagatcaaaaacacattctga
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