Notothenia coriiceps (black rockcod): 104952490
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Entry
104952490 CDS
T04920
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104952490 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104952490 (xab2)
03041 Spliceosome [BR:
ncc03041
]
104952490 (xab2)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104952490 (xab2)
Spliceosome [BR:
ncc03041
]
Complex B
Other components
Prp19-related factors
104952490 (xab2)
Complex C
104952490 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_MalT
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
104952490
NCBI-ProteinID:
XP_010777617
UniProt:
A0A6I9NM15
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAGRSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMEATAEMGKDEEEDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNARQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYYEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYAGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDDGERHTMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDMHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDK
PKPKEKILFVRSDTSRTELAELAKQANPDEIDIGDDDEDDNNQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaaccagatgttatgtttgaggacgatgatctcccttatgaa
gaagagatcatcaggaacccgtactcggtcaagtgctggatgcgttacatcgaattcaag
cagaatgcaggaagatccaccctgaacatgatctatgagagggctctgaaggagctgcct
ggcagctataagctgtggtacaattatctgagagagagacggaaacaaatcaaagggaaa
tgtgtcactgaaccaggatatgaagaggtcaataattgccatgaaagggcattagtgttc
atgcacaagatgccgagaatatggcttgattactgccagtttcttgtttcgcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgccctcagagctcttcctgttacacagcat
ccacgtatctggcctctgtatctccgctttgcccgtaacctgcccctgcctgagacagcc
attcgggtgtatcgcaggtaccttaagctttccccggagaatacagaggaatacatagac
tacttacgttctgttggccgcttggatgaagcagctttgcgactagcagctgttgtcaat
gacgagagctttgtgtccaaagagggcaagtctaactatcagctgtggcatgagctctgc
gacctgatctcccagaaccctgataaagtgacatctctgaatgtcggagccatcatcaga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgttcattagctgactat
tacatcaggagtggtcactttgagaaggctcgtgatgtttatgaggaagccatcctcacg
gtggtaactgtaagggatttcacgcaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagctaagatggaggccactgctgagatgggaaaagatgaagaggaggatgta
gacatggagcttagactggcccgctttgagcagctgatagctcggcggccgctcctgttg
aacagtgttctactgcgacagaaccctcataatgtacatgagtggcacaagcgagttaaa
ctgtatgacggcaatgcacgacagatcatcaacacgtacacagaggcagtgcagacggtg
gatccaatgaaggccactgggaagcctcactccctctgggtttccttcgctaaattctat
gaggaaaatgagcagcttgatgatgcccggaccattttcgagaaggctactaaggtgaac
tacaagcaggttgatgacctggctgcggtgtggtgtgaatatggagagatggagcttcgc
catgagaactatgaacaggcactgcgtatactgaggaaagctacagccatcccatccaag
aaggctgagtactttgatgtatctgagccggtccagaacagagtttacaagtccttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtccacaaaagcg
gtgtatgaccggatcattgacctccgcatcgccacaccacagatcatcatcaattacgcc
atgttcctcgaagagcacaactactatgaggaaagctttaaagcatacgagcgaggtata
gctctctttaggtggccgaatgtttatgacatctggaacacttacctcaccaagttcatc
gatcgttatgcaggcaagaagctggaaagagctagggatttatttgagcaagccctcgac
ggctgccctgccaagtttgccaagaccatttacctgctgtatgccaaactggaggaggga
tatggattggcacgacatgccatggccgtctacgaaagagcaacgcaggcagtagatgat
ggggaacgacataccatgttcaatatatacatcaaaagagcagctgagatttatggagtc
acgtacacaagagccatctaccagaaatctattgaggtccttcctgatatgcatgccagg
gacatgtgtctgcggtttgccgacatggagagcaaactcggggaaattgatcgggcccga
gccatctactcctactgctcccagatttgtgacccacgggtgaccgcaactttctggcaa
acatggaaagaatttgagatccgccatggaaatgaagacactattagagaaatgctaagg
atcaaacgcagtgtccaagccacctacaacacccaggtcaactttatgacctctcagatg
atgaaggccacaacaagctccacagtgtccgatcttgctccaggccaaatgggaattgat
gacatgaaaatgctggagcagaaagcacagcagctcgctgcagaggccgagcaggacaaa
cccaagcccaaagagaaaattctctttgtcaggagtgacacctctcgcactgagttggct
gaacttgccaaacaagctaatcctgatgagatcgacatcggtgatgatgatgaagatgat
aataaccagggaccagaagaggtgcagcttgaacagaagagtgtccctacagctgtcttt
ggagggcttaaagaggactga
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