Notothenia coriiceps (black rockcod): 104953401
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Entry
104953401 CDS
T04920
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104953401 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncc03021
]
104953401 (taf5l)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104953401 (taf5l)
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104953401 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
104953401 (taf5l)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104953401 (taf5l)
STAGA complex
104953401 (taf5l)
TFTC complex
104953401 (taf5l)
SAGA complex
104953401 (taf5l)
SLIK complex
104953401 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
Nbas_N
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
104953401
NCBI-ProteinID:
XP_010778647
UniProt:
A0A6I9NQL0
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MKRVRTEQIQCAVTQYLKRRQYVETDGSLKGAKLFQSAEEMAASLSVQTESGCANIVSAA
PCQSEPQQYEAQFSRLRSFLSGIKSKNPPNHTSGKYETEISWAKEVSGLLYPLFVYLHLD
LVHCGLKGAVDGFYSRFHTLFLQDSEQRATIEQLRHVLTSQDVAANPKLSAFLEHKYVVH
LTEPAYSYLLRYLQSEDNSAICRALNTHLQVEVAASVRTDYQLYGAASGATAAPNPASSW
AGVDGVEGGDGVEVPAGIPQSEVALEALQDCIKKVCEGPPTLTTVCFYAFHNTEQMLNTA
EVSADSRLLSAGFDSSTVKLWSLRARKLKAKPHQVDVSHIHLACDVLEEEEEEEDGSGSE
VKTLRGHSGPVFRTAFLTDSSGLLSCSEDTTVRYWDLGSFTNTALYRGHAYPVWDVDLSP
CSLYFASGSQDRTARLWTFSRTYPLRIYAGHLADVDCVKFHPNSSYLATGSTDKTVRLWS
TQQGASVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRVKLWDLASGSLFKDLRGHTDSVT
SLSFSPDSSLVASSSIDNSVRVWDIRNSHGVAPADGSSNEMVGLYTGNTSNVLNVQFMAC
NLLLVSGTAQEKTEQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgcactgagcagatccagtgtgccgtgactcagtacctgaagcggcgg
cagtatgtggaaactgacggctctctgaaaggagccaagctcttccagtcagcggaggag
atggctgccagcctctcagtgcagacggagtcgggttgtgccaacatcgtctctgcggcg
ccgtgccagtccgagccgcagcagtacgaggctcagttctccaggctgcgctccttcctc
tcaggtatcaaatccaaaaatccaccaaatcacacgtctggaaaatatgaaacagaaata
tcctgggcgaaggaggtgagcggcctcctctacccgctgttcgtctacctccacctggac
ttggtgcactgcggcctgaagggggcagtggatggtttttacagccgtttccacaccctc
ttcctccaggacagcgagcagcgcgccaccatagagcagctccgtcatgttctcacctct
caggacgtcgcagccaaccccaaactgagcgctttcctggagcacaagtacgtggtgcac
ctgacggagccggcgtacagctacctgctgcgatacctgcagagtgaggacaacagcgcc
atctgcagggcgctgaacacacacctgcaggtggaggtcgccgcgtccgtgcgcacagac
taccagctttatggagctgccagtggggcgactgctgccccaaaccccgcctcctcctgg
gcaggagtagacggagtggagggtggggacggggtggaggttcctgcagggatccctcag
agcgaagtggccctcgaggctcttcaggactgcatcaagaaagtctgtgagggcccgccc
acactcaccaccgtgtgtttctacgccttccacaacacggagcagatgctgaacacggcg
gaggtttccgccgacagccggctgctctccgccggattcgacagctccaccgtgaagctg
tggagcctgagagccaggaaactgaaagccaaaccgcatcaggtcgacgtgtcgcacatt
cacctggcctgtgacgtactggaggaggaggaggaggaggaggacggctccggcagcgag
gtcaagacgctgcgcggtcacagcggcccggtgtttcgcacggccttcctgacagacagc
tccggcctgctctcctgctccgaggacaccacggtgcgctactgggacctgggcagcttc
accaacacggcgctgtaccgcggacacgcctaccccgtgtgggacgtggacctcagcccc
tgcagcctctacttcgccagcgggtcccaagaccgcactgcacgcctctggacgttctcc
cgcacgtatccgctgcggatctacgccgggcacctggcggacgtcgactgcgtcaaattc
cacccgaactcaagctacctggccaccggatccacggataaaacggtgcgtctgtggagc
acccagcagggggcgtctgtccgcctgttcaccggacacagaggccccgtgctgtctctc
gccttctcccccaacgggaagtacttagcgtccgccggagaggaccagagggtgaagctg
tgggacttagcttcagggtcgttgtttaaagacctgaggggacacacggacagcgtcacc
agcttgtccttcagccccgacagcagcctggtggcctcgtcctctatagacaactcggtg
cgggtgtgggacatcagaaactcccacggcgtggcgccagctgacgggtcgtctaatgaa
atggtgggactttacacggggaacaccagcaacgtgctgaacgtccagtttatggcctgc
aacctgctgctggtgagcggaacagctcaggagaaaacagaacagtag
DBGET
integrated database retrieval system
