Notothenia coriiceps (black rockcod): 104953514
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Entry
104953514 CDS
T04920
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104953514 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104953514 (prpf4)
Spliceosome [BR:
ncc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104953514 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
PRP4
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_Vps41
PSII_BNR
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
104953514
NCBI-ProteinID:
XP_010778762
UniProt:
A0A6I9NR12
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MFIFEYLLTFVFMLFCSFPSSPGGVKMSDDDDVPVTKRSRVYYGSLEERERERLGGERGR
DALKAGIKAGNINISSGEYLEMEERVSEHQNDALAAFERRRRARQITVSTDDSEVKAGLR
ALGEPIVLFGEGPADRRERLRGVLSVVGPDALKKSRREEERGKKSQDECQQTWYHEGSAS
LKDARLWLAKYSLPRAMRRLEEARVQKDVAEATRAIKQQEQQKSLRNLNNFCSQIGDDRP
ISFCHFSPDSKMLATASWSGLCKLWSVPDCSLLRTLRGHNTNVGAIVFRPQAGVSLDQSD
VSLASCAGDGSVKLWNLESDEPVADIEGHSERVSRVSWHPSGRFLGTSSYDKSWRLWDLE
VQEEILHQEGHSKGVHDIGFHPDGSLAATGGLDSFGRVWDLRTGRCVMFLEGHLKEIYSL
HFSPNGSANHRAAHCTHSQSQSSSLYTQPVTEQLTV
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtttatttttgaatatcttctaacgttcgtcttcatgttgttctgcagttttcccagc
agccccggcggtgtgaagatgtctgacgatgacgatgttccggtgacgaagaggagtcga
gtttattatggcagcctggaggagagagagagggagaggctggggggcgagcgagggaga
gacgcccttaaggctggcatcaaggctgggaacatcaacatctcctcaggcgagtacctg
gagatggaggagcgtgtcagcgagcatcagaacgacgcgctcgctgccttcgagaggcga
cgcagggcgaggcagatcaccgtctctactgatgactcagaggtgaaggcggggctccga
gcgctgggagagccaatcgtattgttcggagaaggaccagctgaccgcagggagagattg
aggggagtcctctcggtggtcggtccggacgctctgaagaaatccaggagagaggaggag
aggggcaagaagagccaggatgagtgccagcagacctggtaccacgaaggctccgcctcc
ctgaaagacgctcgcctctggttggccaaatactctctgccacgggcgatgaggcgtctg
gaggaggctcgcgttcagaaggacgttgccgaggcgacgagagcgataaaacaacaagag
cagcagaagagcctgaggaatctgaataacttctgcagtcagatcggagacgatcgtcca
atcagcttctgccatttcagccccgactccaagatgctcgccacagcttcctggagcggt
ttgtgtaagctgtggtccgtccccgactgcagcctgctgagaacgctcagaggacacaac
accaacgtgggggccatcgtgttccgcccgcaggcaggagtctctctcgaccaatcagac
gtcagcttagcatcatgtgccggagacggctccgtgaagctgtggaacctcgagagtgat
gaaccagtagctgatatagagggtcacagtgagagagtatctcgagtctcctggcatcca
tcagggagattcctgggaacatccagctatgataagtcgtggcgtctgtgggatcttgaa
gttcaggaggagattcttcatcaggagggtcacagcaaaggagtccatgacatcggcttc
caccccgacggctcattggctgccaccggagggctggattcgttcggcagggtgtgggat
ctccggaccggacgctgtgtgatgttcctggagggacacctgaaggagatctactctctg
cacttctctcccaacgggtcagccaatcacagagcagctcactgtacacacagccagtca
cagagcagctcactgtacacacagccagtcacagagcagctcactgta
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