Notothenia coriiceps (black rockcod): 104953838
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Entry
104953838 CDS
T04920
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04010
MAPK signaling pathway
ncc04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104953838
04020 Calcium signaling pathway
104953838
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104953838
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
104953838
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
ETRAMP
ECSCR
Motif
Other DBs
NCBI-GeneID:
104953838
NCBI-ProteinID:
XP_010779164
UniProt:
A0A6I9NNF1
LinkDB
All DBs
Position
Unknown
AA seq
1088 aa
AA seq
DB search
MKDTLRECPPDHGTDVDYACNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNK
EAQEEAEMDAEIELELAQGTLCCMGAPSCGGGKVDKXKVLIILGMHIFGCKFSLKTEAGD
TVPDRKNFDSLLWAIVTVFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNL
LVAILVEGFQAEGDANRSFSDDDRSSCNFEENDKQKDSLHLSDPKICTLTPNGHLDLSPL
SHGLFPGERLTFALDSRKNSVNSLGRANLEQRALFSGRSYHNWGRPCAPHPQALWARRSS
WNSLGGCRPFSSSSPSASPAITTTSARPFYGYGLGGLGGVVGGSLRIRGPRASSSPRRHL
HHVLQDEEESLISPPPIPLHSLHLPHPMLPGHFVPRRDRRALSLELPHLLQVPGPPHLPL
PPHHPLPPLTLHAQHRKKSFSGGMVISGGGGSGHDSPGGLVGVHQDCNGKTPLSQLLQPP
HRHHTEHAGGVNPQSQLMSEVFPQVNTRSKDREDLDDDIEYSLCFRVEKMLEAYKPDWCE
SREEWSVFLFSPRNRFRQICQSIVAHKLFDYVVLAFIFSNCITVALERPKILQGSLERVF
LTISNYVFTAIFVTEMTLKVVSMGLYVGDHSYLRSSWNVLDGFLVFVSLIDIVVSMAGGA
KILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGV
QLFKGKFFYCFGPDVKNITNKSDCMLANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNI
MYHGLDAVAVDQQPVTNNNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQNQEVEE
AKRREEKRQRRMEKKRRKAQKLPYFASYGHIRLMIHTLCTNHYLDLIITFIIAINVITMS
LEHYDQPRSLDLALKYCNYFFTSMFVLESALKLTAFGFRRFFKERWNQLDLAIVLLSVMG
ITLEEIDFSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLL
FMLLFFIYAALGVELFGELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMK
ETLRKVTL
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacacattgcgggagtgcccaccagaccatggcactgatgtggactatgcctgc
aatcctagccttcagtttatctcgcccatgtactttgtctccttcgtgctcaccgcccag
ttcgtgctcatcaatgtggtggtggccgtgctgatgaagcacctggacgactccaacaag
gaggcccaagaggaggcggagatggatgcagaaattgagctggagctggcccagggcacc
ctctgttgcatgggcgcccccagctgtgggggggggaaggtggacaaanataaagttctg
attatcctggggatgcatatctttggctgtaagttcagtctgaagacggaggcaggagac
accgtgcctgacaggaagaactttgactccctgctctgggccatcgtcactgtcttccag
attctgactcaggaggactggaacatggtgctttacaatgggatggcatccacctcgccc
tgtgctgctctctacttcgtagctctgatgacttttggaaattatgtgctcttcaattta
ctggttgccatcctggtggagggttttcaggctgagggtgatgcaaaccgctctttctcg
gacgacgacaggtcttcctgtaattttgaggagaatgataagcagaaagactctcttcat
ctctcagacccaaagatctgtacgctgactcctaacgggcaccttgacttgtccccactg
tcccatggtctgtttccgggagagaggttgactttcgctctggactccaggaagaacagt
gttaattctcttggtagggccaacttggagcagagggctttgttttcaggtcgaagttac
cacaactggggtcgcccgtgtgccccccaccctcaggccttgtgggcccgtcgctccagc
tggaacagcctgggaggatgccggcctttctcctcctcgtctccctccgctagtccggcc
atcaccaccacctctgcacggcccttctatggctacggcctggggggccttggcggcgtg
gttggaggaagtcttcgtatccggggtcctcgtgcctcctcgtccccgcggcgccacctc
caccatgtcctccaagatgaggaggagtctctcatatctcctccccctattcctcttcac
tccctgcaccttcctcaccctatgctcccgggacactttgtacccaggagggaccgcagg
gccctttcgctagagctgccccacctgctgcaggtgccaggacccccgcaccttccactg
ccgccacaccaccctctgccccccttgacgctccacgctcaacacaggaagaagagcttc
tctggggggatggttatcagtggaggcggtggcagtggacacgacagtccggggggttta
gtaggggttcaccaagattgtaatgggaagacccctctttctcagcttctgcagcccccc
cacagacaccacactgagcatgctggaggggtgaacccccagagccagctgatgtcggaa
gtcttcccccaggttaacacacgcagcaaggaccgggaggacctggatgatgacattgaa
tatagcttgtgcttccgcgtcgagaagatgttagaagcgtacaaaccggactggtgtgag
tccagagaggaatggtctgtcttcctgttctccccacggaacaggttcagacagatatgc
cagtccattgtcgcccataagctgtttgactatgtggtgttggccttcatcttctccaac
tgcatcacagtagctctggagaggcctaagatacttcagggcagcttggaaagagtcttc
ctcaccatctccaactacgtctttactgccatatttgtgaccgagatgacactcaaggtg
gtctccatgggtctgtatgtaggggatcattcttacctgcggagcagctggaacgttctg
gatggcttcctggtttttgtgtctttgattgacattgtggtttccatggcgggcggggcc
aagatcttgggtgtgctcagagtgctcaggctgctaagaacactgcgtcccctcagagtg
atcagcagagctccaggtctgaagctggtggtggagaccctcatcacctccctcaaaccc
atcggcaacattgttctcatctgttgtgcattcttcatcatctttggcattcttggggtc
cagctgtttaaaggcaagttcttttactgctttggccccgacgtcaaaaacatcaccaac
aagtccgactgtatgctagccaactacaagtgggtccaccacaagtacaactttgacaac
ctggggcaggctctgatgtccctgtttgtgctggcctcaaaggacggctgggtcaacatc
atgtatcacggcctggatgctgtggctgtggaccaacagcctgtgaccaacaacaatccg
tggatgctgctgtatttcatctccttcctgcttattgttagcttcttcgtcctcaacatg
tttgtcggtgtggttgtggagaatttccacaagtgtcgccagaaccaggaggttgaagag
gccaaaaggcgtgaggagaagcgtcagcggcgcatggaaaagaagaggagaaaagcccag
aagctgccctactttgccagctacggccacatacgcctgatgatccacacactgtgcaca
aaccactacctggacctcatcatcaccttcatcatcgccatcaacgtcatcaccatgtcc
ttagagcactacgatcaacctcgttctctggatctcgccctgaagtactgcaactatttc
ttcacttccatgtttgtgctcgaatcggcactcaaactcaccgccttcggcttccgtcgc
ttctttaaagaaaggtggaaccagttggacctcgccattgtgcttctgtcggtgatgggc
atcaccctggaggagatcgatttcagtgctgccctgcccatcaaccccaccatcatccgg
atcatgagagtactgaggatagcccgagtgctgaagctgctgaagatggccacagggatg
agagccctattggatacggtggtccaagccctgcctcaggtgggtaacctgggcctgctt
ttcatgctgctgtttttcatctacgccgccttaggagtagagctatttggagaacttgta
tgcaacgaagactacccatgtgagggaatgagtcgtcacgctacctttgagaactttggc
atggccttccttaccttatttcaagtctccacgggcgacaactggaatggcatcatgaag
gaaacattgcgtaaagtcactttgtga
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