Notothenia coriiceps (black rockcod): 104953884
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Entry
104953884 CDS
T04920
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin Fat 4-like
KO
K16669
protocadherin Fat 4
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
104953884
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104953884
Cell adhesion molecules [BR:
ncc04515
]
Cadherins
Cadherin related
104953884
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
Laminin_G_2
Ig_Cad99C_N
Laminin_G_1
EGF
Cadherin_2
Fibulin_C
EGF_TEN
hEGF
Ig_BT4661_3rd
EGF_CA
ConA_2nd_BAM2
EGF_DL_JAG
HNF-1B_C
Wzt_C
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
104953884
NCBI-ProteinID:
XP_010779218
UniProt:
A0A6I9NWK2
LinkDB
All DBs
Position
Unknown
AA seq
3227 aa
AA seq
DB search
GPNALVTYTIISGADDSFRIDPESGDLIATKKLDRERRSEYSLLVRADDGKQSSDMRLNI
TVKDLNDHTPKFSRATYSFDIPEDMASGSIVAAILASDSDSGVNGEVTYSLEDDDEDETF
RLNPVTGVFNVTRPLDYETQRFYILTAKARDGGGQASTVRVYFNILDVNDNPPVFNTSSY
SSSVSESLPPGSSIVTVGASDDDDGPNAQLLYRIASGDPQSHFVISKEGVLQIQKALDRE
TQSFYNLVVTVNDLAPPPMTRFTSTAQVSIILLDINDCPPTFTSQRKTYIQENTPVDTVV
FTAKATDADSGPNSYVEYSMKGPFGNKFSIGTIDGDVRLVGELDREELSNYTLTVVATDK
GEPALSSTMDVTMMVLDVNDNTPSFSQNIYDIEIEENTLTGTDVIQVFASDSDEGTNGQI
RFSISGGNTNSDFRIDSVTGGISVAKQLDREARSSYSLVVQAADRGSSPRVDRATVNIVL
LDVNDCSPVFELSPYTVNVLENSENLPQKILQVVARDDDQSANGQLSYMLSGGNDEGAFS
LSSSGQLRLTQTLDREAQGKYILLITATDSGNPSLSGTGTVTVLVDDVNDNVPVFTASAF
HTTIMENAPTGADVLLVNSSDADVGVNGVISYSLTGGHGQFSINPATGQIITSSLLDRED
RANYQLLVVATDGGQPEGLSSSATVSVTVSDINDNPPRFHHHPYVTHIPASTAAGSLVFA
VTVTDEDSSSNAQLHYSLIGRNSEKFKIDPVRGAITAIEKLTGNTEVTLTVRVKDGGTNP
KTDTTTVTVRFVTGGNFPVIKLKEHAFTFPESQATNHVVTTVTGSSMRGGPLSYYISSGN
LDNAFHIDQQSGEVSIRHPLDYEHIQKYVLWIEARDQGFPPYSTYEKVEITVLDVNDNHP
VFDKDPFHAEILESLSPQRVLIVSAVDLDSGPNGQLEYAIIDGNKENSFNINRATGEIRS
TRPLDREKVAQYALKVKATDRGLPSKNSAVKVIINVLDVNDNAPRFSKIFSATVAENAPV
GYTVTRVTTTDEDAGSNAISKYSITDSSLPFNINPNTGDITISRPLNREDTDHYIVKVSA
HDSGWTVSTDVTVFITDINDNAPRFSRPSYYLDHPELTEVGSLVTQVSATDPDEGFNGKI
FYFIRSQSEFFRINSSTGEIFVKQQLRYQNSTGASSININRHSFIVTASDRAVKPLMSET
TVIVNIVDSNDNPPEFDLPSYFTPVTKSVKVGTRLIRVVAHDEKDFGLNSVVEYLITGGN
SSSKFKLDKTGGWITVASSLTSDMNKVFLIDITASDRGNPPLSARTTVRIAVTEENHHTP
EFSQSQISASVSERLVVGSAIRTLSARDKDKEMNGLITYSITSGNDKGLFSLNSKTGLLS
LAQPLDFEEKQHHELRVSATDGGWISKTSYVTVTVHVTDVNDNPPVFDPEEYFPIVQENV
PSGTTVVKLNATDRDSGANAVMAYVIQSSDSDLFVIDPNTGTITTQGFLDYEAKQVYHLT
VKAFNVPDEERCSFANVNIQLKGANEYVPRFVSKQYYFEISEAAPKGTVVGEVFASDRDQ
GDDGVVYYLIFGRSRKKGFGINKKTGQIYVTGSLDREKDEKISLKVLAKNAGSIRGADID
EVFVNITILDANDPPVFTQELYDVQISEGLSPGGLVTFVSAEDSDSVPSWSRFSYSIALE
FDKNVFTINPKSGQVSVAAELDREKTPVYNLTVLAVDTGTPPATGSTTVIVNLEDINDNG
PTLTTAYAEVMENQRAGVEVTTLSATDADLAPNQGPFLYSLLSSGSAKSYFSLSPAGVLT
TSREIDREQISDFYLSVVIKDSGVPQMSSTGTIHVKINDQNDNPSEPRSVEIFVHYFGNM
FPGGSLGDVKPQDPDIQDRFHCSLIPPSSGLFNIPTGTCNLNSKSRSTDGTFELTVRSSD
GVHGSVSNTARVLFMGFTNATVDNSILIRLNSQGVKSFLTNHYLSFLRIANSQLAGLGTG
VLLYGAFELNNQTFLMAAVKRGHGQYVNPSGVATFFQSIKDILYRQSGVQIDAVDHDPCT
RNPCQNGGSCKRRLSVGPDMKTEESVPVILVSNHPLQPYACSCRPGYAGALCETDINECQ
PSPCHNGGTCHNLVGGFSCTCPEGFTGMACERDVNECLSNPCKNGALCQNFPGGFNCLCK
SGFAGKTCDSIINHCECNPCFNGGSCQNLVDEYLCHCPFGVFGKHCELNSYGFEELSYME
FPSLDPNNNYIYIKFATLKSNALLMYNHDNQTGDKAEFLALEIFEGRMRFSFNLGSGTYK
LMTMIKVSDGQFHTVIARRAGMAASLTVDQCGDDQEPGYCAVSNVAVHTDWILDVQPNRL
SVGGVRSIEPVXHRRGQVATHDFVGCIMEFNVNGRPLEPSQALASQGILDRCPRLEGACT
ASPCRHGGTCLDRWSWQQCQCVDGFTGKFCEKYMTADTALSLDGTGRLDYSLKQGPKRDV
LLKQALQGATSDPAGPSSLEVKFRTRSKSGTLLHVQESSNYTTVKLRNGNIHYISDAGVG
GKVERTVGDAVLSDGQWHTLQLLKNGSATLLLVDGAHPRVIQHPTQDFGGLGVLTFALGG
IPPGPAQQKTAAGFDGCMAYVKYNGENLPYTGDHNLVTLTKTSSSVKIGCRGPNLCESSP
CWDGLMCVNQWYTYQCVPPGDCSSNPCQNQGSCVPDPRSGFTCVCSEFYTGKMCETLVAC
LGVQCPQGNVCKSANNGGYVCSANPTAETMVLPIWAVPAIVGSCATVLAMVVLSLILCNH
CRGRNKTKVPKEPKEKKPKEKKKKKKKGSENVAFDDPDNIPPYGDDMTVRKQPEGNPKPD
IIERENPYLIYDETDIPHNNETVPSAPCAPCSGPEADIEHYDIDNASSIAPSDADIIQHY
KQFRSHTPKFSIQRHSPLGFARQSPLPLGATSYNYQPQYTQALRSTPLSHSHSACPTPNP
LSRHSPAPFNKPSSFYRNTPTRELNLARREGSPMDMHNDMCQPPPMFNYATRLGRRSKSP
QTMAGHGHTSRPGSRLKQPIEQIPLETGPPVGLSIEEVERLNTPRPRNPSICSADHGRSS
SEEDCRRPLSRVRNPADGIPAPETSSESDSHDSFTCSEMEYDREKPVTYNSRVPKLSQVN
ESDADDEDYGGRLKQRRYSSRRAEGGPGIPQMPPTEQHYTLPHRLGQQPGGFNWDNLLNW
GPGFGHYVDVFKDLALLPENASARDIEMNSGDGSVTILNEGEAEQYV
NT seq
9684 nt
NT seq
+upstream
nt +downstream
nt
ggtcccaatgctcttgtgacgtacaccatcatcagcggggcggacgacagctttcggatt
gaccctgagtccggagacctgatcgccacaaagaagctggatcgggaacgccgctctgag
tattcccttctggttcgggctgacgatgggaaacagtcgtccgacatgaggctgaacatc
acggtgaaggacctcaacgaccacacgcccaagttctcccgcgcaacgtattcttttgat
atcccagaagacatggcgtcaggctccattgtggcggctattctggccagcgactctgac
tcaggggtgaacggggaggtcacctactcgctggaagatgacgacgaagacgagactttc
cgcctgaacccggtgaccggagtcttcaacgtgacgcgtccgctggactacgagacccag
cggttctatatcctgacggcaaaggctcgggacggcggggggcaggccagcacggtcagg
gtgtatttcaacatcctggatgtgaatgacaacccgcccgtattcaacacgagctcttac
agctcgtctgtctccgagagtctgccgcccggatccagcatcgtcactgtgggggccagc
gatgatgatgatggcccaaatgctcagctcctgtacagaatagcttctggtgatccccag
agccactttgtcatcagcaaggaaggagtcctccaaatccagaaggccttggaccgagaa
acccaatccttctacaacctggtggtcacagtcaacgacctggcccctcccccaatgacc
cgcttcacaagcaccgcccaggtgtccatcatcctactggacatcaacgactgcccgccc
accttcacctctcagaggaagacttacatccaggagaacacgccggtggatacggtggtg
ttcactgccaaggccacggacgctgacagtggacccaacagctacgtcgagtactccatg
aaaggacctttcgggaacaagttcagcatcggcacgatcgacggagacgtcaggttggtt
ggggaactggaccgcgaggagctttctaactacaccctcacagttgtagctacagataaa
ggcgaacctgctctgtcttcaacaatggatgtcactatgatggttctggacgtcaacgac
aacacgccgagcttctcgcagaatatctacgacatcgagattgaggagaacaccttgact
gggactgatgtcatccaggtgttcgccagcgactcagacgagggaaccaacgggcagatc
cgattttccatctcaggaggcaacaccaactctgacttcaggattgattcggttacaggg
gggatttctgtggccaagcagctggaccgcgaggcgcgttcatcgtattcgctggtggtc
caggccgccgatcgaggcagcagcccgagggtggaccgagcgaccgtcaacatcgttctg
ttggacgtcaacgattgctcccctgtgtttgagctctctccttacaccgtcaatgttctg
gagaactctgagaacttgccccagaaaattctgcaggttgttgccagggacgacgaccaa
agtgccaatggccagctaagctacatgctaagtggtgggaatgacgagggcgcgttcagt
ctgtcgtccagcggtcagctgagactcacccagactctggaccgcgaggctcaggggaaa
tacattctgctgattacagccactgactcaggtaatccgtctctgagcgggacggggacg
gtgacagttctggtggacgacgtgaacgataacgtccctgttttcaccgcctccgccttc
cacaccaccatcatggagaacgctcccacaggggcggatgtgctattggtcaacagctcc
gatgcagatgtgggcgtcaacggtgttataagctacagcctgaccggaggacacggccag
ttctccatcaacccggctacaggacagattatcaccagctccctgttggatcgagaggac
agagccaattaccagctgctggtggtggcaacagatggagggcagcctgaaggcttgtcc
agctctgccaccgtgtctgtgacggtgtcagacatcaacgataaccctcctcgcttccac
caccacccctacgtcacccacatccccgcctccaccgcagcagggtctctggtcttcgct
gttactgtcactgacgaggactctagttccaacgcccagctgcactactccctcattgga
cgaaactctgagaagttcaagatcgaccccgtccgaggtgccatcactgccattgaaaag
ctaactggaaacaccgaagttaccctcacagttcgagtaaaagacggaggaactaacccc
aaaacggacacgaccaccgtgactgtccgctttgttaccggaggaaacttccctgtcatc
aaactgaaggagcatgccttcacgttccctgagagccaggcgaccaatcacgttgttaca
acagtcactgggtcatctatgaggggtggtcctttgtcgtattacatctcaagtggaaac
ctggacaatgccttccatattgatcagcaatcaggcgaggtgtccatcagacatccgcta
gattatgaacacattcagaagtacgttctctggattgaagccagagatcaaggcttccca
ccgtattccacttatgagaaagtggaaataacagtgctggacgtgaatgacaatcaccca
gtgtttgataaggatcccttccatgctgagatactggagagcctttcacctcagagggtg
ttaatcgtctctgccgttgatctggacagcgggcctaatggacagcttgaatacgccatt
attgacggcaacaaggagaacagtttcaacataaatagagcaactggtgaaatacgatcc
acgaggcctttggaccgggagaaagtggctcagtacgctttgaaagtgaaagccactgac
cgggggttgccatccaaaaactcagcagtcaaagtgattattaacgtcctggatgtaaat
gacaatgctccacggttttccaagattttcagtgctacagtggctgaaaatgccccggtg
ggttacacagtcaccagagtcaccaccacagatgaggacgctggctcaaatgccattagc
aaatattcaattacagatagcagtcttccattcaatataaatccaaacacaggagacata
acaataagtagaccgcttaatagagaagacacggatcattatattgtcaaagtgtcagcc
catgactctggctggacagttagcacagatgtaaccgtatttataactgatattaatgat
aatgcccccagatttagtcgtccctcttactatctggaccacccagagctcactgaagtg
ggctccctggtcacacaggtgtccgcaacagatcccgacgaaggttttaacggcaaaatc
ttctatttcattcggtcccagtcagagttcttcagaattaactccagcaccggagagata
tttgtgaagcagcagttaagatatcagaactcgacaggtgccagtagtataaatataaat
cgccacagcttcattgtcacagcttcagaccgggcagtgaaacctctgatgagtgagacg
acagtgattgtaaacattgtagacagcaatgataatccccctgagtttgatttacccagc
tattttactcctgtcactaaaagtgtcaaggttggcaccagactgattagggttgtcgct
catgatgaaaaagactttggccttaattcagttgttgagtacttaataacaggaggaaac
agctctagtaaattcaagctagataaaacaggtggatggattactgtggcctcctccctt
acatctgatatgaataaagttttcctcattgacatcacagcgagtgacagaggaaatcct
cctttgtcggcgcgaactacagtacgcattgcggtcaccgaggaaaaccaccacacccct
gagttctcacaaagccaaatctcagcgtctgtatctgaacgccttgttgtgggatcggca
ataaggaccctgtctgccagagacaaagacaaagaaatgaatggccttatcacgtacagt
attacttcaggcaacgacaagggtctgttttcacttaatagtaaaactggacttttatcc
ctagctcagcctctggacttcgaagagaagcaacaccatgagctcagggtttcagccact
gacggtggttggatctcaaaaacaagctatgtcactgttacagtgcatgtcactgatgtg
aacgataacccccctgtgtttgatcctgaggagtacttccccattgttcaggagaatgtt
cccagtggcaccactgtggtcaagctgaatgccacagaccgtgattcgggagctaatgca
gtcatggcttatgtgatacagtcatcagacagtgacctctttgttattgacccgaacacc
gggaccatcaccacccagggcttcttggattacgaggctaagcaggtctaccatttaaca
gtgaaagctttcaatgtcccagacgaagaacggtgcagcttcgccaatgtcaacattcaa
cttaagggtgccaatgaatacgtaccccgctttgtttcaaaacagtactactttgaaatc
tctgaagccgctccaaaaggcacagtggtcggagaagtgttcgccagtgatcgagaccaa
ggagatgatggagtggtttactacctcatttttgggaggagcagaaagaaaggctttggc
attaacaagaaaacaggtcagatttatgtcacaggtagtctagaccgtgagaaagatgaa
aagatttcactgaaggtgttggcaaagaacgcgggaagcatccgtggggctgatattgac
gaggtgtttgtgaacatcaccatccttgatgccaacgatcctcctgttttcacccaagaa
ctctatgatgtgcagatcagcgaaggtctttcacctggaggtcttgtaaccttcgtgagt
gctgaggactcagactctgtcccaagttggagcaggttttcgtactccattgctcttgaa
tttgataaaaatgtgttcacgataaacccaaaatctggccaagtgtctgtggctgcagag
ctagacagagaaaaaactcctgtgtataatctaacagttcttgctgtggatactggcaca
ccccctgcaactggaagcaccacagtgattgtgaacctggaagatatcaatgataacggt
ccaactttgacaactgcttatgctgaggtgatggaaaatcagagagcaggcgttgaagtt
acgacgctttcagcgacagacgcagatctagcaccgaaccaaggccctttcctatacagc
cttctcagttctggttctgccaaaagctacttcagccttagtccagctggagtgctaacc
accagtcgtgagatcgacagggagcagattagcgacttctacctctctgttgtgatcaag
gactctggtgtgcctcagatgtcctccacaggaacaattcacgtcaaaataaacgatcag
aatgacaatccttcagagccgaggtctgtagaaatctttgtccactacttcgggaacatg
tttcctggtggatctttgggagatgtcaaacctcaagaccctgacattcaggataggttc
cactgctcccttattcccccgtcctccggtctgtttaatatcccgactggaacatgcaac
ctcaactcaaaatctcgctcaacagatggaacttttgaattaactgtccgtagcagtgac
ggcgtccacgggtcagtcagcaatacagctcgagtcctcttcatgggtttcacgaatgcc
acagtggacaatagcatactaattcgactcaactctcaaggagtcaaaagcttccttacc
aaccactacctcagctttctacgtattgccaactctcagcttgcaggcctaggcaccggg
gtgctgctttatggagcatttgaactcaacaatcagactttcctcatggcagctgtgaaa
cgaggccacggacaatatgtcaaccccagtggtgtggccacattcttccagagtatcaaa
gacattttatatagacagagcggggtgcaaatagatgcggtggaccatgatccatgcaca
cgtaacccgtgccagaatggaggcagctgcaagaggcgtctcagtgtcgggcctgatatg
aagacagaagaaagtgtcccagtgatccttgtttccaaccacccgctgcagccctacgct
tgcagctgcaggccaggatacgcaggagctctgtgtgagacagacataaacgagtgccag
ccatcgccctgccacaatggcggcacctgccacaatctggtgggaggtttctcctgcacc
tgtccagaaggtttcaccgggatggcctgtgagagggatgtcaacgaatgcctttccaat
ccctgcaagaacggggcgctgtgccagaacttcccaggcggcttcaactgcctctgcaaa
tccggctttgcaggcaaaacgtgtgattccatcatcaatcactgtgagtgtaacccgtgt
tttaatggcgggtcctgtcagaatctggtggatgaatatctctgtcattgtccatttggg
gttttcggcaaacactgtgaacttaacagctacggctttgaggagctctcctacatggaa
tttccgtctctggatcccaacaataactacatatatattaagtttgctaccctgaagagc
aacgcgctgcttatgtacaaccacgataaccagaccggagacaaggcggagttcctggct
ctggagatcttcgagggacggatgcgcttctccttcaacttgggaagtggaacttataaa
ctgatgactatgataaaagtttcggatgggcagttccacacagtcatcgccaggagagct
gggatggctgcatcgctgactgtggaccagtgtggtgatgaccaggaaccaggctactgt
gctgtgagcaatgtggcagtgcacacggactggatcctggacgtgcagcccaaccggctc
tctgtcggaggcgtcaggtcaatagagcccgtcnnccatcggcgcggtcaagtcgccacc
cacgactttgtgggctgcatcatggagttcaacgtcaacggccgcccgctggaacccagt
caggcgctggcatcgcagggcatccttgacagatgtccgagactggaaggagcctgcacc
gccagcccctgcagacatgggggaacctgcttggatcgctggtcctggcagcagtgccag
tgcgtggatggcttcaccggcaaattctgtgagaaatacatgacagcggacaccgccctg
tccctggatggcaccgggcgcctggactactccctgaagcagggccctaaacgggacgtc
ctcctgaagcaggccctgcagggcgcgacctctgaccccgccgggcccagcagcctggag
gtcaagttcaggacgcggagcaagagcggcactctgctgcacgttcaggagagcagcaac
tacaccactgtgaagctgaggaacgggaacatccactacatctcggatgcgggcgtcggg
ggaaaggtggagcggacggtgggcgacgccgtgctgtcggacggtcagtggcacacgctc
cagctgctgaagaacggctcggccacgctgctgctggtggacggagcgcacccccgggtc
atccagcaccccacgcaggacttcgggggcctcggcgtcctgacctttgccctcggagga
atcccacccggacccgcgcagcagaagactgcagcaggtttcgacggttgcatggcctat
gtgaagtacaatggggagaatctgccgtataccggagatcacaacctggtgaccttaacc
aagaccagttcttctgttaagataggctgcaggggtcccaacctgtgtgagagcagccca
tgctgggacggcttgatgtgcgtcaaccaatggtacacctaccagtgtgtcccgcccggc
gactgcagctcgaacccctgccagaaccagggcagctgtgtgccggacccccgttcagga
ttcacctgcgtctgctccgagttctacacgggcaagatgtgtgagaccctggtggcgtgt
ctgggcgtccagtgccctcagggtaacgtctgcaagtcagccaacaacggagggtatgtc
tgcagcgctaaccccaccgcggagacgatggtccttcccatctgggcggtgcctgctatc
gttggcagctgtgccaccgtcctcgccatggtggtgctcagtctgatcctgtgcaaccac
tgccggggccgcaacaagaccaaagtgccaaaggaacccaaggagaagaaacccaaggag
aagaagaagaaaaagaagaagggcagcgagaacgtagcattcgatgacccggataacatc
ccaccatatggtgacgacatgacggtacggaaacaaccagaagggaaccccaaaccggac
atcattgagagggagaacccctatctgatctatgatgaaacggacattccccacaacaat
gagaccgtccccagtgctccctgcgccccctgtagcggcccagaggcagatattgaacac
tacgacatagacaacgccagcagcatcgccccatcggacgccgacatcatccagcactac
aagcagttccgcagccacacgcccaagttctccatccagagacacagcccgctgggcttc
gccagacagtctccgttacccctcggagccacaagctacaactaccagcctcagtacacc
caagcactgaggtccaccccgctcagccactcccactcagcctgccccacccccaaccct
ctctccaggcactccccagccccattcaacaagccctcctccttttaccggaacaccccg
accagagagctcaacctggcccggcgtgagggcagtccgatggacatgcacaacgacatg
tgccagcccccgcccatgttcaactacgccacccggctggggaggcgcagcaagagtccg
cagaccatggccggccacggccacacctccaggcccggcagtcggctcaagcagccgatt
gagcagatccctctggagacggggcctcctgtggggctgtccatcgaggaagtggagcgg
ctgaacacgcctcgcccgcgtaaccccagcatctgcagcgcggaccacgggcgctccagc
tcggaagaggactgccgcagaccactgtcgagggtccgcaaccccgccgacggcatccct
gccccggagacgtcttcagagagcgactcacacgactccttcacctgctcggagatggag
tacgaccgggagaagccggtgacttacaactcccgagttcccaagctctcgcaagtcaac
gagtccgacgctgacgacgaggactacggcgggaggctgaagcagcggcggtactcgagt
cggagggcagaaggagggccggggattccccagatgcctccgacggagcagcattacaca
ctgccccacagactgggccagcagccagggggcttcaactgggacaatctgttgaactgg
ggtcccggctttggacattatgtggacgtgttcaaggacttagccttgcttcctgagaac
gcgtcagcgagagacattgagatgaacagtggggacggctcggtgaccattctaaacgaa
ggagaagctgagcaatatgtatga
DBGET
integrated database retrieval system
