Notothenia coriiceps (black rockcod): 104955105 Help Entry 104955105         CDS       T04920                                  Symbol col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04382   Cornified envelope formation ncc04510   Focal adhesion ncc04512   ECM-receptor interaction ncc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ncc00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104955105 (col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104955105 (col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104955105 (col4a1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     104955105 (col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:ncc04147]     104955105 (col4a1)    00536 Glycosaminoglycan binding proteins [BR:ncc00536]     104955105 (col4a1) Exosome [BR:ncc04147]  Exosomal proteins   Exosomal proteins of other cancer cells    104955105 (col4a1) Glycosaminoglycan binding proteins [BR:ncc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104955105 (col4a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  104955105 NCBI-ProteinID:  XP_010780636 UniProt:  A0A6I9P281 LinkDB All DBs Position Unknown AA seq 1643 aa AA seqDB search MLLSSGTLLLLLAALYSTVDLTGAEGCGASCGKCDCSGVKGAKGERGFNGLQGNMGFPGM HGPEGPPGQMGTTGTFGESGAPGLKGVRGPPGLPGFPGNPGLPGINGNDGGPGSQGIPGC NGTKGDRGLDGTSGFPGLQGPPGISGIPGMKGDPGGVIGIIPLRGDKGFAGTPGLPGTSG FPGPVGPPGRTGFHGPKGDSGPPGPPGEKGDKLAFVSEKGEKGDPGFRGPPGPPGTTLGV EGGRPTVHVPGPQGERGLKGDQGDKGFCVPHLYGIKGEVGPPGSRGKFGKDGDDGSKGEK GFPGTAGFTGSQGEKGEKGPPGYGNGAPGPPGPSGNPGFQGVKGFPGPQGEAGPAGRHIE GPRGETGQKGHFGEKGDRGLDGESLVGPPGQPGNPGLPGPAGPPLDPNECNNEKGAPGPA GSPGLQGELGQKGDIGDTCVQCEGSGPPGLPGPHGPKGDGGPPGPVGGKGQKGTSGSSGQ TGNPGSQGSPGLIGATGAVGKPGDVIGVDGLKGEKGLPGLSGTPGRPGLDGQPGRDGFPG IQGHKGESAREGIKGDRGQDGNTGQIGPPGERGPPGQPGFGRTGEPGEKGGHGRHGTPGT PGQPGVKGEPGQGESTAGPQGVPGAHGETGIPGLQGDRGLQGDRGLPGFPGQKGEYGPQG IGLPGPTGPKGINGLPGAPGLSGETGRGGQDGLTGQSGTPGPKGEPGRGLPGPKGSQGQP GITGFPGDKGGFGRPGIPGLEGQTGPTGDQGIQGDVGVPGPPGLVGVPGSPGKGSPGAPG PPGPAGESGPHGRGGVKGDKGYPGSPGLDMPGPQGAKGQSGFPGTSGYKGLPGRAGLPGR EGLIGTQGIKGEMGVIGTPGIPGFPGPPGTSGSHGLIGDPGITGPRGGIGDSGLKGERGD RGLQGPPGNMSEVDMEHMKGEKGDLGNRGDSGGTGEKGHRGLPGNPGMSGKNGESGSPGQ PGEKGDSGFPGEPGNFGQPGQKGTVGEMGIPGLSGPQGSKGDSGTTGHTGFRGTDGQKGD KGTGGDPGIGLPGTPGEKGQTGQPGFPGTAGERGLKGHEGMSGNAGLQGTKGDKGSVGYS GQSGRPGEKGTPGLSGSAGETGPDGRPGEGGLQGPPGVPGVKGDPGIDGIPGSSGERGDP GLSGQGFSGSPGVLGGKGDKGSPGFPGTPGHPGVSGIKGDKGLSGSHGPQGEAGERGYPG NSLEGPKGESGASGQTGVTGSPGVPGTSGVPGRGGPKGDKGGQGQPGFQGESGHKGDAGT PGLPGQDGLPGLFGQKGESGLSGVPGFPGTRGQGGDIGFKGELGDNGFQGEKGIDGPPGP PGPHTYIKGDIGFPGTQGIPGPQGPYGLPGQKGHQGVTGVQGPKGEDGIPGYNGQAGSKG NSGLPGPQGPRGHPGPPGPDGVPGQIGHTGPSSMDHGFLVTRHSQTVEVPTCPEGTRLIY DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP MPMNMAPITGQGIKPFISRCSVCEAPAMVIAVHSQTIMIPSCPHGWDSLWIGYSFVMHTS AGAEGSGQALASPGSCMEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVPT TLKAGSLRTHISRCQVCMKRTYT NT seq 4932 nt NT seq  +upstreamnt  +downstreamnt atgctgttatcgtccggcaccctgttactgctgctggcggctctctactccactgtggac ctgacgggggctgagggctgcggggcttcatgtggaaaatgtgactgcagtggtgtgaaa ggagcaaagggtgagcgtggattcaatggtcttcagggtaatatgggatttccagggatg catggacctgaaggtcctcctggacaaatgggcacaacgggcacttttggtgaatctgga gctcccgggctgaaaggagtgaggggtcctcctggtctgccaggtttcccaggaaacccc ggactaccgggcattaacggaaatgacggtggacccggttcgcaaggtatcccaggatgc aatgggaccaaaggagatagaggactggatggcacctctggttttcccggtcttcaagga cctcccggcatctcaggaattcctggaatgaagggtgaccctggtggtgtgatcgggatt attcccttgagaggagacaaaggatttgctggcacacctggactacctggaacaagtgga tttcctggaccagttggacctcccggacgaacaggctttcatggacccaaaggagattct ggcccccctggccctcctggagagaagggtgacaagctggcctttgtgagtgagaaagga gagaagggtgatccaggatttcgtggcccccccggccctcctgggacaacactgggagtg gaaggaggacgtcccacagtgcatgtacctggaccacagggtgaaagaggacttaaggga gaccaaggagacaaaggcttttgcgtccctcatctatatggtatcaaaggtgaagttggc cctcctggatcaagaggaaaatttggcaaggatggggatgatgggtcgaagggagaaaaa ggctttcctggaactgctggattcactggttcccagggtgaaaagggagaaaaaggaccg ccaggatatggtaatggtgcccctggtcctcccggcccaagtggtaacccagggttccaa ggagtaaaaggttttcctggtcctcagggagaggcaggtcctgcaggccggcacattgag gggcctcgcggagagacgggacagaaaggacactttggagagaaaggagacaggggactg gatggagagtctctcgttggacctccgggacaaccgggaaaccctggactccctggacca gctggaccaccacttgaccctaatgaatgcaacaatgagaaaggagctcctggcccagct ggatctccaggcttacaaggagaattaggacagaaaggtgacataggagatacctgtgtt caatgtgaaggttccggcccacctggattacctggtccacacggccctaaaggagatggg gggcctccagggccagtaggagggaagggacaaaagggtacttctggctcttctggacaa actggaaatcctggttctcaaggttctcccgggttgattggagccactggtgctgttggc aagccaggggacgttattggagttgatggtttgaaaggagagaaaggtctgcctggtctt tctggtactccagggaggcccggcctggatggacagccggggagagatggtttccctggt atacaaggccacaaaggagaatcggccagggagggcataaagggtgaccgtggacaagat gggaacactggtcagatcgggcctccaggagagaggggtccaccgggccagcctggcttc ggtcgaactggagagcctggagagaaaggtggtcatggaaggcacggaactcctggaact cctggacaacctggtgttaaaggtgagccaggtcaaggtgagagcacggctggacctcag ggagtacctggagcacacggcgaaactggcattcctggacttcaaggtgacagaggcctt cagggagatcgagggttgcccggtttcccaggacagaagggtgaatatggaccccagggt attggattacctggtccaactggtcctaaaggaatcaatggattaccaggagctccagga ttatcaggagagacaggaagaggtggacaggatggcttgactggacaaagtggtacacct ggaccaaaaggtgagccagggcgaggtcttccaggcccaaaaggttcgcaaggccaacca ggaattactggcttcccgggagataagggtggctttggacgacctggtattcctggacta gaaggccagactggacctacgggagatcagggaatccaaggtgatgtgggagtcccagga cctcctggactggtcggcgtgccaggttctccaggtaaaggttcacccggagcccccgga ccaccaggaccagctggagagtccggaccacatggtagaggaggtgtaaagggagacaag ggctaccccggttctcctggtctggacatgccggggcctcagggagcgaagggacaatcc gggttcccaggaacgtcaggatataaaggactgcccggacgagcaggtctacctggcagg gaaggactcattggaacacaaggtattaaaggtgaaatgggtgtcatagggacaccggga ataccaggatttcctggaccacctggtacgtctggatctcatggactgataggtgatcca ggtattactgggccaagaggtggtattggagactcaggactcaaaggagagaggggagat cgaggtctgcagggtcctcctggaaacatgagtgaagtggacatggagcacatgaagggg gagaagggagaccttggaaacagaggtgactcggggggcactggagagaaaggccaccga ggacttcctggtaaccctggaatgtcaggcaaaaatggagagtctggatcacctggccaa ccaggtgagaaaggagactctggttttcctggagagccgggcaatttcggacaacctgga cagaaaggcactgtaggagagatgggaatccccggtctgtctggtccacagggtagtaaa ggagattctggtacaacaggacataccggattcagaggcacagatggacagaaaggtgac aagggaacaggtggtgacccaggtattgggctcccaggaactccaggagaaaagggtcag acaggccagcccggattcccaggaactgcaggagagaggggtctgaagggtcacgagggg atgtccggcaatgcaggactgcaaggaaccaagggagacaagggaagcgtcgggtattca ggtcagtcaggtagaccaggtgagaagggaactcctgggctctcggggtctgcaggagaa actggtcctgatggtcgccctggggaaggcggcttgcagggacctcctggtgttcctgga gtgaagggagatcctggaatagatggcatcccaggatcctcaggggaaagaggagaccca ggtttatctggccaaggtttctctggatctcctggagtgcttggtggcaaaggtgacaaa ggcagtcctggtttccctggcactccaggtcatcctggcgtctctggtatcaaaggagac aagggactttcaggctcacacggaccccagggcgaggcaggcgagagggggtacccaggt aactccctcgagggccctaagggagagtcgggagcatcaggacaaaccggagtaacagga tctccaggagtaccagggacctctggtgtgccaggcagagggggccctaagggagacaaa ggaggccagggtcagcctggtttccagggagagtcgggacataagggtgatgctggaact cctggactccctggacaagatggccttccaggtctttttggacagaagggagagagtgga ttgtcgggagtccctggcttcccaggtacaaggggtcaagggggtgacattggattcaaa ggagaacttggagacaatggattccaaggagagaagggcattgatggccccccaggtccc cctggccctcacacctacatcaaaggagacattgggtttccaggtactcagggcataccg ggtccccaggggccatatgggctccctggacaaaaaggacatcaaggtgtgacaggtgtt caagggccaaaaggtgaagatggcattcctggatataatggtcaggctggatccaaggga aactctggtcttccagggccacagggacccagaggacaccctggccccccaggacctgat ggtgttccaggtcaaattggtcacaccgggccctcatccatggatcacgggttcctggta acccgccacagccaaacggtggaggttccaacctgtcctgagggaacccggctcatatat gacggctattccttgctctacgtacaaggcaacgaacgctcacatggacaggacttgggt acggccggcagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatcaac aatgtgtgcaacttcgcctcgcgtaacgattactcctactggctcacctcccctgagcca atgcccatgaacatggcacctatcaccggtcaaggcatcaaacccttcatcagcagatgt tctgtgtgtgaagctccagccatggtgatagcggttcacagtcagaccatcatgatccca tcatgcccccatggctgggactctctatggattggatactctttcgtcatgcacaccagt gccggtgcagagggctccggccaggctctggcgtctcctggttcctgtatggaggagttc cgcagtgctcccttcatcgagtgtcacggtcgtggaacctgcaactactatgctaactcc tacagcttttggcttgccaccattgaagacgaggatatgtttacgaaacctgtcccaaca acgctaaaagccggaagtctccgaacacacataagccgctgtcaggtgtgcatgaagagg acatatacataa

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