Notothenia coriiceps (black rockcod): 104955105
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Entry
104955105 CDS
T04920
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04510
Focal adhesion
ncc04512
ECM-receptor interaction
ncc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104955105 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104955105 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104955105 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncc04147
]
104955105 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ncc00536
]
104955105 (col4a1)
Exosome [BR:
ncc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104955105 (col4a1)
Glycosaminoglycan binding proteins [BR:
ncc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104955105 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104955105
NCBI-ProteinID:
XP_010780636
UniProt:
A0A6I9P281
LinkDB
All DBs
Position
Unknown
AA seq
1643 aa
AA seq
DB search
MLLSSGTLLLLLAALYSTVDLTGAEGCGASCGKCDCSGVKGAKGERGFNGLQGNMGFPGM
HGPEGPPGQMGTTGTFGESGAPGLKGVRGPPGLPGFPGNPGLPGINGNDGGPGSQGIPGC
NGTKGDRGLDGTSGFPGLQGPPGISGIPGMKGDPGGVIGIIPLRGDKGFAGTPGLPGTSG
FPGPVGPPGRTGFHGPKGDSGPPGPPGEKGDKLAFVSEKGEKGDPGFRGPPGPPGTTLGV
EGGRPTVHVPGPQGERGLKGDQGDKGFCVPHLYGIKGEVGPPGSRGKFGKDGDDGSKGEK
GFPGTAGFTGSQGEKGEKGPPGYGNGAPGPPGPSGNPGFQGVKGFPGPQGEAGPAGRHIE
GPRGETGQKGHFGEKGDRGLDGESLVGPPGQPGNPGLPGPAGPPLDPNECNNEKGAPGPA
GSPGLQGELGQKGDIGDTCVQCEGSGPPGLPGPHGPKGDGGPPGPVGGKGQKGTSGSSGQ
TGNPGSQGSPGLIGATGAVGKPGDVIGVDGLKGEKGLPGLSGTPGRPGLDGQPGRDGFPG
IQGHKGESAREGIKGDRGQDGNTGQIGPPGERGPPGQPGFGRTGEPGEKGGHGRHGTPGT
PGQPGVKGEPGQGESTAGPQGVPGAHGETGIPGLQGDRGLQGDRGLPGFPGQKGEYGPQG
IGLPGPTGPKGINGLPGAPGLSGETGRGGQDGLTGQSGTPGPKGEPGRGLPGPKGSQGQP
GITGFPGDKGGFGRPGIPGLEGQTGPTGDQGIQGDVGVPGPPGLVGVPGSPGKGSPGAPG
PPGPAGESGPHGRGGVKGDKGYPGSPGLDMPGPQGAKGQSGFPGTSGYKGLPGRAGLPGR
EGLIGTQGIKGEMGVIGTPGIPGFPGPPGTSGSHGLIGDPGITGPRGGIGDSGLKGERGD
RGLQGPPGNMSEVDMEHMKGEKGDLGNRGDSGGTGEKGHRGLPGNPGMSGKNGESGSPGQ
PGEKGDSGFPGEPGNFGQPGQKGTVGEMGIPGLSGPQGSKGDSGTTGHTGFRGTDGQKGD
KGTGGDPGIGLPGTPGEKGQTGQPGFPGTAGERGLKGHEGMSGNAGLQGTKGDKGSVGYS
GQSGRPGEKGTPGLSGSAGETGPDGRPGEGGLQGPPGVPGVKGDPGIDGIPGSSGERGDP
GLSGQGFSGSPGVLGGKGDKGSPGFPGTPGHPGVSGIKGDKGLSGSHGPQGEAGERGYPG
NSLEGPKGESGASGQTGVTGSPGVPGTSGVPGRGGPKGDKGGQGQPGFQGESGHKGDAGT
PGLPGQDGLPGLFGQKGESGLSGVPGFPGTRGQGGDIGFKGELGDNGFQGEKGIDGPPGP
PGPHTYIKGDIGFPGTQGIPGPQGPYGLPGQKGHQGVTGVQGPKGEDGIPGYNGQAGSKG
NSGLPGPQGPRGHPGPPGPDGVPGQIGHTGPSSMDHGFLVTRHSQTVEVPTCPEGTRLIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMNMAPITGQGIKPFISRCSVCEAPAMVIAVHSQTIMIPSCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCMEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVPT
TLKAGSLRTHISRCQVCMKRTYT
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgctgttatcgtccggcaccctgttactgctgctggcggctctctactccactgtggac
ctgacgggggctgagggctgcggggcttcatgtggaaaatgtgactgcagtggtgtgaaa
ggagcaaagggtgagcgtggattcaatggtcttcagggtaatatgggatttccagggatg
catggacctgaaggtcctcctggacaaatgggcacaacgggcacttttggtgaatctgga
gctcccgggctgaaaggagtgaggggtcctcctggtctgccaggtttcccaggaaacccc
ggactaccgggcattaacggaaatgacggtggacccggttcgcaaggtatcccaggatgc
aatgggaccaaaggagatagaggactggatggcacctctggttttcccggtcttcaagga
cctcccggcatctcaggaattcctggaatgaagggtgaccctggtggtgtgatcgggatt
attcccttgagaggagacaaaggatttgctggcacacctggactacctggaacaagtgga
tttcctggaccagttggacctcccggacgaacaggctttcatggacccaaaggagattct
ggcccccctggccctcctggagagaagggtgacaagctggcctttgtgagtgagaaagga
gagaagggtgatccaggatttcgtggcccccccggccctcctgggacaacactgggagtg
gaaggaggacgtcccacagtgcatgtacctggaccacagggtgaaagaggacttaaggga
gaccaaggagacaaaggcttttgcgtccctcatctatatggtatcaaaggtgaagttggc
cctcctggatcaagaggaaaatttggcaaggatggggatgatgggtcgaagggagaaaaa
ggctttcctggaactgctggattcactggttcccagggtgaaaagggagaaaaaggaccg
ccaggatatggtaatggtgcccctggtcctcccggcccaagtggtaacccagggttccaa
ggagtaaaaggttttcctggtcctcagggagaggcaggtcctgcaggccggcacattgag
gggcctcgcggagagacgggacagaaaggacactttggagagaaaggagacaggggactg
gatggagagtctctcgttggacctccgggacaaccgggaaaccctggactccctggacca
gctggaccaccacttgaccctaatgaatgcaacaatgagaaaggagctcctggcccagct
ggatctccaggcttacaaggagaattaggacagaaaggtgacataggagatacctgtgtt
caatgtgaaggttccggcccacctggattacctggtccacacggccctaaaggagatggg
gggcctccagggccagtaggagggaagggacaaaagggtacttctggctcttctggacaa
actggaaatcctggttctcaaggttctcccgggttgattggagccactggtgctgttggc
aagccaggggacgttattggagttgatggtttgaaaggagagaaaggtctgcctggtctt
tctggtactccagggaggcccggcctggatggacagccggggagagatggtttccctggt
atacaaggccacaaaggagaatcggccagggagggcataaagggtgaccgtggacaagat
gggaacactggtcagatcgggcctccaggagagaggggtccaccgggccagcctggcttc
ggtcgaactggagagcctggagagaaaggtggtcatggaaggcacggaactcctggaact
cctggacaacctggtgttaaaggtgagccaggtcaaggtgagagcacggctggacctcag
ggagtacctggagcacacggcgaaactggcattcctggacttcaaggtgacagaggcctt
cagggagatcgagggttgcccggtttcccaggacagaagggtgaatatggaccccagggt
attggattacctggtccaactggtcctaaaggaatcaatggattaccaggagctccagga
ttatcaggagagacaggaagaggtggacaggatggcttgactggacaaagtggtacacct
ggaccaaaaggtgagccagggcgaggtcttccaggcccaaaaggttcgcaaggccaacca
ggaattactggcttcccgggagataagggtggctttggacgacctggtattcctggacta
gaaggccagactggacctacgggagatcagggaatccaaggtgatgtgggagtcccagga
cctcctggactggtcggcgtgccaggttctccaggtaaaggttcacccggagcccccgga
ccaccaggaccagctggagagtccggaccacatggtagaggaggtgtaaagggagacaag
ggctaccccggttctcctggtctggacatgccggggcctcagggagcgaagggacaatcc
gggttcccaggaacgtcaggatataaaggactgcccggacgagcaggtctacctggcagg
gaaggactcattggaacacaaggtattaaaggtgaaatgggtgtcatagggacaccggga
ataccaggatttcctggaccacctggtacgtctggatctcatggactgataggtgatcca
ggtattactgggccaagaggtggtattggagactcaggactcaaaggagagaggggagat
cgaggtctgcagggtcctcctggaaacatgagtgaagtggacatggagcacatgaagggg
gagaagggagaccttggaaacagaggtgactcggggggcactggagagaaaggccaccga
ggacttcctggtaaccctggaatgtcaggcaaaaatggagagtctggatcacctggccaa
ccaggtgagaaaggagactctggttttcctggagagccgggcaatttcggacaacctgga
cagaaaggcactgtaggagagatgggaatccccggtctgtctggtccacagggtagtaaa
ggagattctggtacaacaggacataccggattcagaggcacagatggacagaaaggtgac
aagggaacaggtggtgacccaggtattgggctcccaggaactccaggagaaaagggtcag
acaggccagcccggattcccaggaactgcaggagagaggggtctgaagggtcacgagggg
atgtccggcaatgcaggactgcaaggaaccaagggagacaagggaagcgtcgggtattca
ggtcagtcaggtagaccaggtgagaagggaactcctgggctctcggggtctgcaggagaa
actggtcctgatggtcgccctggggaaggcggcttgcagggacctcctggtgttcctgga
gtgaagggagatcctggaatagatggcatcccaggatcctcaggggaaagaggagaccca
ggtttatctggccaaggtttctctggatctcctggagtgcttggtggcaaaggtgacaaa
ggcagtcctggtttccctggcactccaggtcatcctggcgtctctggtatcaaaggagac
aagggactttcaggctcacacggaccccagggcgaggcaggcgagagggggtacccaggt
aactccctcgagggccctaagggagagtcgggagcatcaggacaaaccggagtaacagga
tctccaggagtaccagggacctctggtgtgccaggcagagggggccctaagggagacaaa
ggaggccagggtcagcctggtttccagggagagtcgggacataagggtgatgctggaact
cctggactccctggacaagatggccttccaggtctttttggacagaagggagagagtgga
ttgtcgggagtccctggcttcccaggtacaaggggtcaagggggtgacattggattcaaa
ggagaacttggagacaatggattccaaggagagaagggcattgatggccccccaggtccc
cctggccctcacacctacatcaaaggagacattgggtttccaggtactcagggcataccg
ggtccccaggggccatatgggctccctggacaaaaaggacatcaaggtgtgacaggtgtt
caagggccaaaaggtgaagatggcattcctggatataatggtcaggctggatccaaggga
aactctggtcttccagggccacagggacccagaggacaccctggccccccaggacctgat
ggtgttccaggtcaaattggtcacaccgggccctcatccatggatcacgggttcctggta
acccgccacagccaaacggtggaggttccaacctgtcctgagggaacccggctcatatat
gacggctattccttgctctacgtacaaggcaacgaacgctcacatggacaggacttgggt
acggccggcagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatcaac
aatgtgtgcaacttcgcctcgcgtaacgattactcctactggctcacctcccctgagcca
atgcccatgaacatggcacctatcaccggtcaaggcatcaaacccttcatcagcagatgt
tctgtgtgtgaagctccagccatggtgatagcggttcacagtcagaccatcatgatccca
tcatgcccccatggctgggactctctatggattggatactctttcgtcatgcacaccagt
gccggtgcagagggctccggccaggctctggcgtctcctggttcctgtatggaggagttc
cgcagtgctcccttcatcgagtgtcacggtcgtggaacctgcaactactatgctaactcc
tacagcttttggcttgccaccattgaagacgaggatatgtttacgaaacctgtcccaaca
acgctaaaagccggaagtctccgaacacacataagccgctgtcaggtgtgcatgaagagg
acatatacataa
DBGET
integrated database retrieval system
