Notothenia coriiceps (black rockcod): 104955107 Help Entry 104955107         CDS       T04920                                  Symbol col4a2 Name (RefSeq) collagen alpha-2(IV) chain   KO K06237   collagen type IV alpha Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04382   Cornified envelope formation ncc04510   Focal adhesion ncc04512   ECM-receptor interaction ncc04518   Integrin signaling ncc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ncc00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104955107 (col4a2)    04518 Integrin signaling     104955107 (col4a2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104955107 (col4a2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104955107 (col4a2)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     104955107 (col4a2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:ncc04147]     104955107 (col4a2)    00536 Glycosaminoglycan binding proteins [BR:ncc00536]     104955107 (col4a2) Exosome [BR:ncc04147]  Exosomal proteins   Exosomal proteins of other cancer cells    104955107 (col4a2) Glycosaminoglycan binding proteins [BR:ncc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104955107 (col4a2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  104955107 NCBI-ProteinID:  XP_010780638 UniProt:  A0A6I9P0S4 LinkDB All DBs Position Unknown AA seq 1140 aa AA seqDB search MGIVFFIMDWEFRGQLVRTSEVWGADSVPGEGPRGQYGDKGYSGQPGPPGAPGLSGQDGE VLGGFKGQRGLPGDDGAAGHDGVPGTPGAPGGCSPGDGGQVDVTGPCGTFPGPAGLPGLP GSSGLPGFEGPPGQKGSKGPPGEHGGKGETGEQGKGGRTGPHGFSGPRGELGVPGRNGSV GSPGVPGVPGRYGSQGEKGAHGEIFGASSGSPGDSGQPGLQGNKGQTGDPGDQGYPGMGG MPGMIGFKGETGPLGLQGVEGRPGPAGKYGYPGDPGGAGLPGQSGSTGQPGFTGERGVEG DPGPPGPIGLKGVPGLYGANGGTGEYGPSGEPGDSGQDGRPGVPGMKGYKGSPGMSGFEG NRGNFGRKGFSGPGGDPGTMGQVGLKGLLGQSGTKGDRGLRGPSGDKPLIPAQMAVDMKG TKGDFGNYGNQGFTGPRGLKGLPGVPGKEGSHGYPGKPSNNKGHRGDPGAEGLLGIKGMP GPTGNRGITGFGGMPGNKGINGGPGAYGASGETGRKGFKGEKGPRIDLPGTTGLRGEHGL PGDPGQKGLPGQPGDWGTPGFGGIEGRRGESGNPGIIGYTGSDGQKGTPGNQGQKGFTGT PGKDGHPGFPGFPGNKGFPGLKGLYGLHGLKGQKGVPGTPGLDTTGPTGEPGSKGQKGGD GDPNSQPGFPGTVGLKGFQGPLGDRGQPGSSGLRGPFGPDGTPDRPGLIGDPGSHGPKGY PGFPGAKGFPGVDAPPGEKGVLGTNGFPGIPGRKGLKGDRGSFGYRGPNGVSGKKGEKGE QGVMGIPGGFGLKGERGQSGLKGNSGPTGFRGIPGNQGPLPIPVRVPGERGLSGPQGIKG PEGVRGESGPQGPPGDTGFIGPIGRKGMPGIGGTPGTPGYRGESGQMGHPGLEGSEGHHG NPGIHGLPGMPGRSVSVGYLLVKHSQTEQVPMCPVGMSKLWDGYSLLYLEGQEKAHNQDL GLAGSCLPRFNTMPFLYCNPGDLCYYASRNDKSYWLSTTAPIPMMPVVEGEIKPYISRCS VCEAPSVAIAIHSQDITIPMCPAGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFR TAPFLECNGAKGTCHYFANKQSFWLTSIDQSFHTEPSSETLKAGQLLSRISRCQVCMKNL NT seq 3423 nt NT seq  +upstreamnt  +downstreamnt atgggaatcgtgttttttatcatggactgggagttcaggggtcagttggtgaggacctct gaggtttggggggcggacagtgttcctggagaaggtccaagaggacaatatggagacaaa ggttactcaggtcagcctggtccacccggcgcacccgggctaagtggacaagacggtgaa gtccttgggggcttcaagggccaacgtggtctacctggagacgatggcgctgcaggtcat gatggagttccaggaacacctggcgctccaggcggctgtagtccaggagatggaggacag gtggatgtaacaggtccttgtggcacttttcccggacctgctgggctacctggacttcca ggttccagtggattaccgggtttcgaaggtcctccaggccaaaagggatcaaagggtcca cctggagaacatggagggaaaggcgaaacaggagaacaaggcaaaggtggccgtactgga ccacatggtttttccggcccccgtggagagttgggggttcccggccgcaatggttcagta ggatcccctggtgtgcctggtgtgccgggcagatatggttcgcaaggtgaaaaaggtgct cacggagagatctttggagcatcgtcaggatcccccggggactcaggtcagccgggactg caagggaataaaggccagactggagatccaggagatcaaggctatccaggaatgggcggc atgcctggtatgatcggcttcaagggtgagactggccctctgggtctgcagggggtggaa ggaaggcctgggcctgcaggcaagtacggttaccctggagaccctggaggagcgggtcta cctgggcagtcaggcagtaccggacagccaggtttcactggagagaggggagttgaggga gacccgggccctccaggtccaataggattaaaaggagtccctgggctatacggtgctaat ggtggtaccggagagtacggcccatcaggtgaacctggagattctggtcaagatggacgc ccaggagttccaggaatgaagggatacaaaggatctcccggcatgtcaggctttgagggt aacaggggcaattttgggaggaagggcttcagtgggccaggcggagacccaggaacgatg ggccaagtcggcctaaaaggattgctgggtcaaagtggaacgaaaggtgatcgtggtttg agagggccctccggggataagcctctcatccccgcccagatggctgttgacatgaaggga acgaagggggacttcggaaattatggaaatcaaggtttcaccgggccgagaggtcttaag ggtttgcccggtgtgcctggtaaagagggatctcacggatatcctggaaagcccagcaat aacaagggtcaccgtggagatccaggtgcagaggggctgctgggaataaaaggaatgccg ggcccaactgggaacagaggaattactgggtttgggggaatgccaggcaacaagggcatt aatggaggtcctggtgcctatggtgcatcaggcgaaacaggaaggaagggttttaaaggt gagaaaggcccacgcatagaccttccaggaaccaccgggttgagaggagagcatggtctt ccaggagatccaggccagaaaggattacctggacaaccaggggactggggcacgcctgga tttggtggaattgaagggagaaggggagagtctgggaatccaggaataatagggtacaca ggctctgatgggcagaagggaactcctggtaaccaaggtcaaaaaggctttactggaact cctggaaaggacggacacccaggttttcctggcttcccaggaaacaaaggtttccctggc ctgaagggtctttatggattacatggacttaaaggacaaaagggtgtccccggcacacca ggtctggataccactggaccaactggggaacccggaagcaaaggacagaagggaggagac ggggaccccaacagccagccaggttttcccggcacagtgggtttgaaaggctttcagggc cctctaggtgaccggggtcaacctggatcgtcgggactccgaggcccatttggaccagac gggactcctgacagaccaggactcataggggaccctggctctcatggacctaaagggtac ccaggtttccctggagcaaaagggtttcctggagtggatgctcctcctggggaaaaaggt gtactgggaacaaatggttttcctggaatccctggcaggaaaggactcaaaggagataga ggttcctttggatacagggggccaaacggtgtttctgggaagaaaggggaaaaaggagag caaggagtgatgggcattcccggaggctttggtttgaagggagaaagagggcaatctggc ctaaaaggaaactctggacctacaggttttcgtggaataccaggaaaccagggtcccctt ccaattccagtaagagtcccaggagagagaggcctctcaggaccacagggtatcaaagga ccagagggggtcagaggggaatcagggccacaggggccccccggcgatacaggtttcatc ggacccatcggtcggaagggcatgccggggattggtggtacaccaggaacgcctggatac cgtggagagtccggacaaatgggtcaccccggtctggaaggcagtgaaggtcaccacggc aaccctggtatccatgggttacctggtatgccgggccgcagcgtcagcgtgggatacctg ctggtgaaacacagtcagacagaacaggtgcccatgtgtcctgtgggcatgtccaaactg tgggacggctacagtctgctgtacctcgagggccaggagaaggcccacaaccaggacctc ggtttggctggctcctgcctcccacggttcaacaccatgcccttcctgtactgcaaccct ggagacctttgttactatgccagcaggaatgataagtcctactggttgtcgaccaccgct cctattcccatgatgcctgtggtagagggagagattaaaccgtacatcagccgctgctca gtatgtgaagctccatcagttgccatcgcaatccacagccaggacatcaccatccctatg tgtcctgcgggctggcgcagcatgtggatcggctactccttcctcatgcacacagcagca ggaaatgaaggcggaggtcagtctttgtcatcgcccggctcttgcctggaggacttccgc acagcaccgttccttgagtgtaacggggccaaaggcacatgccactactttgctaacaaa cagagcttctggctaacctccatagatcagtcgttccacactgagccgtcatcagagacg ctcaaagccggtcagctgctgtcacgcatcagccgctgccaggtctgcatgaagaacttg tga

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