Notothenia coriiceps (black rockcod): 104955352
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Entry
104955352 CDS
T04920
Symbol
puf60
Name
(RefSeq) poly(U)-binding-splicing factor PUF60 isoform X1
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104955352 (puf60)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104955352 (puf60)
Spliceosome [BR:
ncc03041
]
Complex A
U2 snRNP components
U2 related factors
104955352 (puf60)
Complex B
104955352 (puf60)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
DUF1543
Motif
Other DBs
NCBI-GeneID:
104955352
NCBI-ProteinID:
XP_010780980
UniProt:
A0A6I9P0M8
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All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MAVTETGGGEAALTMENGQGTGSKLGLPPLTPEQQEALQRAKKYAMEQSIKSVLVKQTIA
HQQQQLTNLQMAAVTMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAF
APFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
QAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTLARDPTTGRHRGF
GFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPPAAAVAAAAA
TAKITAQASMNPFQRDLMAFQEAVAGASVLGALAAPQLLSQQMGIPQAVMAAQAPGVITG
VYRDMSVTPVRPPLPVLPQVGLVNPVLASPPVLSNQAGGSNQQERKEEKEKEEMLQDGTG
QEMLSDQEHMSISGSSARHMVMQKLLRKSESTVMVLRNMVGPEDIDDDLEGEVTEECGKF
GAVNRVIIYQEKQGEEEDADIIVKIFVEFSMASEMNKAIQALNDRWFGGRKVVAEVYDQD
RFNSSDLSA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcggttacggagactgggggaggtgaagcagctctgacgatggagaatggacagggc
acaggctccaagctcggcctgccgcctcttaccccagagcagcaggaggcattacagagg
gcaaagaagtatgctatggaacaaagcattaagagtgtgttggtgaagcagaccattgcc
catcagcaacagcagctcaccaacctgcagatggcagcagtgacaatgggctttggagat
cctctctcacctttacaatcggtggcagctcagcggcaacgtgccctagccataatgtgt
cgggtgtatgtgggctccatatactatgagctcggtgaggacacaatcagacaggccttt
gccccctttggcccaatcaagagcattgacatgtcttgggactctgttacaatgaaacac
aaggggtttgcctttgtggagtatgatgtgccagaggctgctcagctggctctggagcag
atgaactcggtcatgctggggggtcgaaacattaaggttgggcggccaagtaacatcggt
caggcgcaacccatcattgaccagctggcagaggaggcgcgcgcctttaatcggatctac
gtggcgtccgtccaccccgacctgtccgacgacgacatcaagagtgtgtttgaggccttc
ggaaggatcaagtcttgcacgttagccagagaccccacaacagggcgacacagaggcttt
ggcttcattgaatatgaaaagcctcagtcagccctggacgctgtatcttctatgaacctg
tttgacctggggggtcagtacctacgggtcggcaaagcggtgactccgcccatgccccta
ctgacccccacgacccctggtggtctgccgcctgctgcagcggtggccgcagcggcagcc
accgctaagataacggcccaggcaagtatgaatcccttccaaagggatttaatggccttc
caggaggctgtagccggtgcatcagtcctgggggcgttagccgcaccccaacttctcagt
cagcaaatgggtattcctcaggctgttatggctgcccaggcaccaggggtcatcacaggt
gtgtaccgagatatgagtgtgactccagtgcgtccacccttaccagtgctcccccaggtt
ggtcttgtgaacccagtgctcgcttcaccgccagtcctttccaatcaagctggaggctcc
aaccaacaagagaggaaagaagagaaagagaaagaggagatgctgcaggacggtacaggg
caggagatgttgagtgaccaagaacacatgagcatctcgggcagcagtgccagacacatg
gtgatgcagaaactgcttagaaaatcagagtctacggttatggtgctccgaaatatggtt
ggacctgaggacatcgacgacgacctggagggggaggtgaccgaagagtgcgggaagttt
ggcgccgtcaacagagtcatcatataccaggagaagcaaggagaagaggaggatgcagat
atcattgtcaaaatttttgtagagttttccatggcctcagagatgaacaaagccatccag
gccctcaatgaccgctggttcggaggtcgcaaagttgtcgcagaggtgtatgaccaagac
cgtttcaacagtagtgatctctctgcgtaa
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