Notothenia coriiceps (black rockcod): 104955414
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Entry
104955414 CDS
T04920
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104955414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104955414
03032 DNA replication proteins [BR:
ncc03032
]
104955414
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104955414
mRNA cycle factors
Common to processing body (P body) and stress granule
104955414
DNA replication proteins [BR:
ncc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
104955414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
104955414
NCBI-ProteinID:
XP_010781042
UniProt:
A0A6I9NYL3
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSES
PFEGAYGNLKRLFDKASKMYHQVKKQEMKKLSPSRQRSKDIKHLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPSHAGAHHPPSEEEEEQQLAESSCPVLPDSLVFK
MVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESQVPPLHTDV
TAYVVQNPDHQREKDLLQWNLPVGCGRLQPAPQH
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccggggcaggacagcgagccggaggcgaaagtccttctcatcaagcggctt
tacagggctgtggtggagtctgtgcacaagctggatgtcatcatcggcagcaaagcatcc
tacagagaggtcttcaagccggagaacatcagccttcgcaacaagctgagggagctctgt
gtgaagctgatgtttctccatcctgtcgactacggccgtaaagccgaggagctgctctgg
aggaaggtctactatgaggtcatccaggttatcaagaccaacaagaagcacatccacagc
cgcagcgctcttgagtgcgcctaccgtacacacctgatcgccggcgtgggcttctaccag
cacctgctgctttacatccagtcacattaccagctggagctgcaggactgcatcgactgg
acccacgtcacggacccactgataggtcgaaagaaacccgtgtcagccacccccaaggag
atggagtgggcacagatggcctgtcatcgatgtctggtctaccttggagatctagcacgt
tatcagaatgaacttgccggagtggaggctgagcagctggcagaaaggttctaccatcag
gcgctgtctgtcatgccacacgtgggaatgcctttcaaccagctgggcacactggcaggg
agcaagttctataacgtggaagcaacctactactacctacgctgcatccaatcagaatcc
cccttcgaaggcgcctatgggaacctgaagcgcctgtttgacaaagcttccaagatgtac
caccaagtgaagaagcaggaaatgaagaagctgtctccatctcgacaaagatctaaagac
attaagcacctcctggtgagcttcatgtacctccagagcctgctgcagcccaagaacagc
ctgatggagacggagctgacgtcgctctgccagtcggtgctggaggacttcaacctggtg
ctgttctacctgccgcccccgtcacatgccggggcgcaccacccccccagcgaggaagag
gaggagcagcagctcgctgagagctcctgccccgtgctgcctgacagcctcgtcttcaag
atggtggtcacgtgtctgatggtggtgcacagcctgaagaggggaggatcgaagcagtac
agtgcgtccattgcttttactctggcgctgttctcccatttggtgaaccacgtcaacatc
cgcttgcaggctgagctggaggaaggggagagccaggtgccgccgcttcacactgacgtc
acagcctatgttgtgcagaatccagaccatcagagggagaaagatctgctacagtggaac
cttccggtgggctgtggacgtctacaacctgctccacaacactga
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integrated database retrieval system
