Notothenia coriiceps (black rockcod): 104955428
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Entry
104955428 CDS
T04920
Name
(RefSeq) cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04514
Cell adhesion molecule (CAM) interaction
ncc04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
104955428
04519 Cadherin signaling
104955428
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104955428
Cell adhesion molecules [BR:
ncc04515
]
Cadherins
Major cadherins
104955428
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
Cadherin_FAT4_N
Ig_CLSTN
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
104955428
NCBI-ProteinID:
XP_010781058
UniProt:
A0A6I9P1Z7
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MRTDFALVLTAALLFDTFGRNNGEQASKGPCRPGFSQSFYSVLISRDVLQGHGTLKDTAV
SSQKVKFDDCMGNEAVVFRSGDPIFSVRTDGSIYAQGVAASLDEPVQFKLTAGGPTTRVW
ETVIQLALIDPLLPQQNENEVIKEEGKVAERKEGKEASQAPPPVIMFSGSGRNSSKGLRR
QKRDWVIPPINVAENSRGPFPQMLVSIRSDQDKDISIRYSITGVGADQPPNEVFNIDPVV
GKMFVTKPLDREHRSSYHLRAHAVDMNGNQVENPIDLYIFVIDMNDNRPEFKNQVYNGSV
DEGSKPGTYVMHVSAFDGDDNTTANGMVRYRILSQTPHSPIPNMFTINSETGDIVTVAAG
LDREKVSQYTIIVQATDMEGNLNFGLSNTATAIITVTDINDNPPMLTSRTFSGEVPENRV
DLVVANLTVIDADQPHSPNWNAIYRIISGDPNGHFTIRTDPVSNDGMVTVVKPVDYEMNR
AFMLTVVVSNQAHLASGIQSSLQSTAGVTISVQDVNEPPYFPNNPKHIRFEEGVPAGTSL
TTFSASDPDRLSMLQTIRYSKLNDPADWLSINRTNGQILTTAMLDRESIYVKNNLYEATF
LATDNGSPAASGTGTLQIYLIDINDNPPALIPRESQICERVNKNVHGVNITAADADTEPN
AGPFVFELPNFPASIRRNWTISRISGDLRPPLACGTNIS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagaactgacttcgctctggtcctgacagcagcccttctttttgacacgttcgggagg
aataatggggagcaagcttccaaaggtccctgccgacctggcttctcacaaagcttctac
tctgtgctgatttcaagggatgtactgcaaggccatggcacactcaaagataccgccgtg
tcatcacaaaaagtgaagttcgatgactgcatggggaatgaggctgtggttttccggagc
ggtgatccgatcttcagcgtgcggacagatgggtccatctatgcccagggagtggcagcc
agcctggacgaaccagtccagtttaaactaacagccgggggtcccaccacacgagtctgg
gagacggtgatccagctggccctcattgacccactgttacctcaacaaaatgagaatgag
gtcataaaggaagaggggaaagtcgcggagagaaaagaggggaaggaggcgtcacaagca
ccacctcctgtcatcatgttctcagggtcgggcaggaacagctccaagggtctgaggaga
cagaagagggactgggtgatcccaccaatcaacgtggcagaaaattctcgaggaccgttc
cctcagatgctcgtcagcattcgctcagatcaagacaaggacatatccatccgatacagc
atcactggggtgggagcagatcaaccgcccaatgaggtgttcaatatcgaccccgtggtg
ggaaagatgttcgtcaccaaacctctcgatcgagaacatcgctcttcctaccatctgcga
gcccatgctgtggacatgaatgggaaccaggtggagaaccccatcgatctgtacatcttc
gtcatcgacatgaatgacaacagacccgagttcaaaaaccaggtctacaatggctctgtg
gatgaaggctctaaaccagggacgtatgtgatgcacgtgtcagcgttcgacggtgacgac
aacaccacggctaacggaatggtgcgctatcgaatcctgtcccagacgccgcacagcccc
atccccaacatgttcaccatcaacagtgagactggagatatcgttaccgtggcagccggc
ctcgatcgagagaaagtgtcccagtataccatcatcgtacaagccacggacatggaggga
aatctaaacttcggcctctccaacacggccactgccatcatcactgtcaccgacatcaac
gacaaccctcccatgctgacctcaagaactttttccggtgaggtcccggagaaccgagtg
gatcttgtggtggctaatctgacggtgatagatgccgaccaaccgcactctccgaactgg
aacgccatctacaggatcatcagtggagatccaaacgggcacttcaccatccgcacggac
cccgtcagcaacgacggcatggtcaccgtggtgaagccagtagactatgagatgaaccgt
gccttcatgctgacggtggtggtctccaaccaggcccacctagccagtggcatccagtcg
tcgctccagtccacagctggggtcaccatatccgtgcaggacgtcaacgagcccccttac
ttccccaataaccccaaacacatccgctttgaggagggggtccctgctggcaccagcctc
acgaccttctctgcctccgatcccgaccgactatcgatgctgcagacaatcaggtattcg
aagctgaacgacccggcagactggctgtccatcaacagaaccaacggtcagatcctaacc
acagccatgctggaccgggagtctatctatgtgaaaaacaacctatatgaagcaacgttt
ctggcaacagataatggctctcctgcagccagcggcacgggcactctgcagatctatctg
atagatattaatgacaaccccccagccctcatacccagggagtctcagatctgtgagcgg
gtgaacaagaacgtccacggggtcaacatcaccgctgccgacgccgacacagaacccaac
gctggacccttcgtcttcgagctgcccaacttccccgccagcatccggcgcaactggacc
atttctcggatcagcggtgacttacggccgcctttggcctgcggtaccaatatatcttga
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