Notothenia coriiceps (black rockcod): 104955991
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Entry
104955991 CDS
T04920
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E-like
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04010
MAPK signaling pathway
ncc04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104955991
04020 Calcium signaling pathway
104955991
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104955991
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
104955991
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TPR_TTI1_C
Motif
Other DBs
NCBI-GeneID:
104955991
NCBI-ProteinID:
XP_010781713
UniProt:
A0A6I9P405
LinkDB
All DBs
Position
Unknown
AA seq
1323 aa
AA seq
DB search
MARFGDECAPSTVDSGDGDPELGGEGADAAAESLTASIRQAKAQRARTMAMYNPVPHRQN
CLTVNRSLFIFAEDNFIRRTARRFIEWPPFEYMILATITANCVVLALEQHLPGDDKTPMA
KRLEKTEPYFIGIFCFEAGIKLLALGFVFHKGSYLRNGWNVMDFIVVLSGIMATAGAHMN
IPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAMIPLLQIGLLLFFAILMFAIIGLE
FYSGKLNQNCLPSVELLENQTVDSSELAFACGVRKCPEGYECNDTWIGPNDGITQFDNIL
FAVLTVFQCITMEGWTAVLYNTNDALGTTWNWMYFIPLIIIGSFFVLNLVLGVLSGEFAK
ERERVENRRAFMKLRRQQQAERELNGYRAWIDRAEEVMLAEENKSSGRSPLDVLKRASKK
TGARRGAPGDEKYTDMSTASMSRSRMNFRSGRRGPAAYLRRKERMLRISIRRMVKTDTFY
LMVLSLVALNTICVAIVHHNQPDWLTIFLYYAEFVFLGLFLAEMFLKMYGLGFRLYFHSS
FNCFDCGVIVGSIFEVVWGFIRPGMSFGISVLRALRLLRIFKITKYWASLRNLVVSLMSS
MKSIISLLFLLFLFIVVFALLGMQLFGGRFIFEDYTPTNFDTFPASIMTVFQILTGEDWN
EVMYNGIRSQGGVQYGMWSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEEE
EFFNQRYARGRDGLISDGRRRPYLYRKRAIHRGRPNFPEEPEDRSGPPEEQPLKGPNAFV
SRRERRRKVHMSVWEQRANQLRKRRQVASREELLAGPTEDTEETPAVPLPASEATPGQLP
ESVGTPISDTPASVTIAIPEPPGSEPLVNLSEEKTGGGNHRAAGGGRHRMARKFRPSQGG
EDGARHRRHRHRDARPEAKSLDCTVSPHEVPPVKRSHSQEGVLDEKEERDEREGAERAEE
EEGSVKEDGGTCIINPYAEVGEECQGETADPPQCEQLLERPWSEQGDGEHTDQTLPVEPA
LEATEFSVRTIESESRHVSIKRAKSDPAESVAIEMSAQPLLELRPMTVNSKELEAYNSEQ
TDKENDTEDDEEEDDDDDDDEEDDEDEEEEMEEPPTPPKPVAPDSMFIFKASNPIRRICH
YMVSLRYFEMTILLVIVASSIALAAEDPVCTNSDRNKVLRYFDYVFTGVFTFEMIIKMID
QGLILHDGSYFRDMWNILDFIVVVGALIAFALTNVMGNNKGRDIKTIKSLRVLRVLRPLK
TIKRLPKLKAVFDCVVTSLKNVFNILIVYQLFMFIFAVIAVQLFKGKFFYCNDSSMNSEK
ECQ
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggctcgatttggagatgagtgcgctcctagcacggtggactccggggatggagacccg
gagctcggcggggaaggagcggacgcggctgccgagagtctcaccgcctccatcaggcaa
gccaaggcgcagcgggcccggaccatggctatgtacaaccccgtgccccaccggcagaac
tgcctcaccgtcaacaggtcgctcttcatatttgcagaggacaacttcatcaggagaacc
gccaggcgattcattgaatggccaccatttgagtacatgatcctggccaccatcaccgct
aactgtgttgtgctggccctggagcagcacctccctggagacgataagacccccatggca
aagagactggagaagacagagccgtacttcatcgggatcttctgcttcgaggcggggatc
aagctgctggcccttggtttcgttttccataaaggctcgtacctgaggaacggctggaac
gtcatggacttcatagtcgtgctcagcgggatcatggccactgctggagcccacatgaac
atccccgttgaccttcggaccctgagggcggtgcgagtgctgagacctcttaaactcgtc
tcggggatacccagcctgcagattgtcctgaagtccatcatgaaggccatgatcccgctg
ctacagatcggcctgctcttgttcttcgccatcctcatgttcgccattattggtctggag
ttttacagcgggaagcttaaccaaaactgcctgccatctgtcgaactccttgaaaatcag
acggttgactcgtcagagttggcgttcgcctgcggagtgaggaagtgtccggagggatac
gaatgcaacgacacctggatcggacccaacgacggcatcacgcagttcgacaacatcctg
ttcgctgtgctcaccgtcttccagtgtatcaccatggagggatggacggccgttctctat
aataccaacgatgctttgggtaccacatggaactggatgtacttcatccctctcatcatc
attggctcattcttcgtgctgaacctggttttgggagtcctgtccggagagtttgccaag
gaaagggagagggtggagaacaggcgggccttcatgaagcttcgccgccagcagcaggcg
gaaagagaactgaacggctacagagcctggatagacagggcagaggaggttatgctggca
gaggagaataaaagttctgggagatcgccgttagatgtgctaaagagagcgagtaagaag
actggtgcacggagaggagcgccaggggacgagaagtatacagacatgtctactgccagc
atgtctcgatccaggatgaacttccgcagcggccggcgaggcccagcagcctacctgcgg
cgtaaagagcgcatgttacgcatctccatccgccgcatggtgaagacggacactttctac
ctgatggtgctcagtcttgtggctctcaacaccatctgtgtggccatcgtccaccacaac
cagcccgactggctgaccatcttcctctactatgcagagtttgtttttctggggctgttt
ttggctgagatgtttttaaaaatgtatggtctgggtttccggctctacttccattcatct
ttcaactgctttgactgtggggtcattgttggcagcatctttgaggtagtttggggcttc
atcaggcccggcatgtcatttgggatcagcgtactgagggcgctgagactcctgagaata
ttcaaaataaccaaatactgggcgtctctcaggaacctggtcgtgtcccttatgagctcc
atgaagtccatcatcagcctgctgtttctcctctttctgttcatcgtggtgtttgctctg
ctggggatgcagctttttggaggaaggttcatctttgaagattacactcccaccaacttt
gacacgtttccagcttccatcatgacagtgtttcagattctgactggtgaggactggaac
gaggtgatgtataacgggattcgctcgcagggtggagtgcagtacggcatgtggtcatca
atctacttcatagtgctcaccctgtttggaaactacactctactgaatgtcttcttggcc
atcgctgtggataatctggccaatgcacaggaactgacaaaggatgaagaggaggaggag
gagttcttcaaccagagatatgccagaggcagagatggcctgatatctgatgggaggaga
agaccctacctatacaggaaacgagccatccaccgaggcagacctaacttcccagaggag
cccgaggacaggtcggggcccccagaagaacagcccctcaagggccccaatgccttcgtc
agccgccgcgagaggaggaggaaagtccacatgtcggtgtgggagcagagagccaatcag
ctgcggaaacgtcgccaggtggccagcagagaggagcttcttgcaggccctactgaggac
acagaggagactcccgccgtccccctccccgcctccgaagccaccccgggtcaactgccc
gagtctgtggggacgcccatctcagacaccccggcgtccgtcaccatcgccatccccgag
cccccgggatcagagcctctggttaacctgagcgaggagaaaacaggaggaggtaaccac
cgggcggcaggcgggggccggcacaggatggcccggaagttcagacccagtcaggggggg
gaggacggggcccggcacaggaggcaccgtcaccgcgacgctcgccctgaagccaagagt
ctggactgcaccgtgtcgcctcacgaggtgccgccggtcaaacggtcccacagccaggag
ggggtcctggacgagaaggaggagagggacgaaagagagggggcagagagagcagaggaa
gaggaagggtccgtcaaagaggatgggggaacatgcatcatcaacccatacgcagaagtt
ggagaagagtgtcaaggagaaactgctgaccctccccagtgtgagcagctgctggagcgt
ccctggtcagagcagggtgacggagagcacacagaccaaaccctcccagtggagcccgcc
ctagaggccacagagttcagtgtgaggaccatcgagtctgagagccgccatgtctccatc
aagcgtgccaaatccgacccggcggaaagcgtggccatcgaaatgtctgcacaaccgctg
ctggagctcaggcccatgacagtgaacagcaaagagttggaggcgtacaattctgaacag
acagacaaagagaacgataccgaggatgatgaggaagaggacgacgacgacgacgacgat
gaggaggatgatgaggatgaggaggaggagatggaggaacctccgactcctcccaaacct
gtagctccagacagcatgttcatcttcaaggcctccaacccaatcaggaggatctgtcac
tatatggtctctttgcgctacttcgagatgaccatcctcctggtgatcgtggcgagcagc
atagcactggctgctgaggaccctgtgtgcaccaactccgacagaaacaaggtcctccgt
tatttcgactacgtgttcactggagtgttcacctttgaaatgatcatcaagatgatagac
cagggtctcattctgcacgatggctcttatttccgagatatgtggaacatcctggatttc
atcgtggtggtgggagctctgattgcttttgctttaacgaatgtgatgggaaacaacaaa
ggcagagacatcaagacaatcaagtctctcagagtgttgagagttctgcgacctcttaaa
accatcaagaggcttcctaaactcaaggctgttttcgactgtgtggtcacatctctgaag
aacgtcttcaacatcctcatcgtgtatcagcttttcatgttcatcttcgccgtgatcgcc
gtgcagctcttcaaggggaagttcttctactgcaacgacagctccatgaattcagagaag
gaatgccagtaa
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