Notothenia coriiceps (black rockcod): 104956347
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Entry
104956347 CDS
T04920
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104956347 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104956347 (exosc2)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104956347 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104956347 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
104956347
NCBI-ProteinID:
XP_010782133
UniProt:
A0A6I9P5C0
LinkDB
All DBs
Position
Unknown
AA seq
293 aa
AA seq
DB search
MAADMRLPTIQKPVSLTFSAFDRKDLVVPGDVITSDTGFMRGHGTYVDEEKLTASVAGEV
QRVDKLICVKPLKTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGEL
RRRSAEDELTMREYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIK
RQKTHFHNLPCGASMILGNNGFVWLYPTPEQLEEEAGGFYTSLEPVSVSDREVISRLRNC
LLALAAQKVLLFDTSVLYCYESSVHHQVKDILKPEVMEEIVMLTQQKLLDQEG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgatatgagattgccaactattcagaaaccagtgtcgctaacattttctgct
tttgaccgaaaagatctagtcgtcccgggcgatgttatcacttcagacaccggcttcatg
aggggacatggtacctatgttgatgaagagaagctgactgcttcagttgctggagaggtg
cagagagtagacaagctgatctgtgtcaaaccactaaagaccagattcaacggtgaggtt
ggagatgtggtggttggcagaatcacagaggtacaacagaaacggtggaaggtggaaacc
aactcccgtctggactctgttctcttgttgtcatctgtcaatctgcctggaggagagctg
aggagacgatctgcagaagatgagctcaccatgagggaataccttcaggagggcgatctc
atcagtgcagaggtgcagtccgtcttctcagatggagccctatcacttcatacccgtagt
ttaaagtatggaaaattgggtcagggagtgctggtacagctttctccttctctgatcaag
aggcagaaaacacatttccacaacctgccatgtggtgcatccatgatcctcgggaataac
ggctttgtgtggttgtatcccacaccggaacaactggaggaggaggccgggggcttctac
accagcctggagcctgtcagtgtgtcggatcgagaagtgatttcacggttgaggaactgt
ctactggctttggctgcacaaaaggtccttttgtttgacaccagtgttctctattgctac
gaatcttcagttcatcaccaggtcaaggacatcttgaagccagaggtgatggaggagatt
gtaatgttgacgcaacagaagctgttggatcaggaaggttaa
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