Notothenia coriiceps (black rockcod): 104956393
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Entry
104956393 CDS
T04920
Name
(RefSeq) platelet endothelial cell adhesion molecule-like
KO
K06471
platelet/endothelial cell adhesion molecule
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04148
Efferocytosis
ncc04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
104956393
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104956393
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ncc04090
]
104956393
00536 Glycosaminoglycan binding proteins [BR:
ncc00536
]
104956393
04091 Lectins [BR:
ncc04091
]
104956393
CD molecules [BR:
ncc04090
]
Proteins
104956393
Glycosaminoglycan binding proteins [BR:
ncc00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
104956393
Lectins [BR:
ncc04091
]
I-type lectins (Siglecs)
104956393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_2
Ig_3
ig
Zwei_Ig_N
Ig_C19orf38
LpdD_chaperone
Motif
Other DBs
NCBI-GeneID:
104956393
NCBI-ProteinID:
XP_010782178
UniProt:
A0A6I9P5G7
LinkDB
All DBs
Position
Unknown
AA seq
377 aa
AA seq
DB search
FKIRDITLSIEPAPDVTRDTNVTLRCQAIVSSSGPEALSREYRIYKDGNTIYSKNTSTSE
DLLYPLSEARVSNSGKYKCKISIEQEDMTSGAEKLTVAGLSKPLVHINKGVVSEGEEVTA
TCTAPGETGSFFFYFYEDSKEIQEKQVNVNQVEARLHFSSTGNHTIHCGYTVLVTPESFK
SKESLSVTVSVNELPIVAVLEIFPKSKIYEGDKLHIFCSVKNDQRSSESINLYLSQGSQL
LSIGYSKVNHSMVALAKDPGEFECRLEMGNVRKIYTKAVSVTELFSVPTLTMYPAEVFQR
EYMTLNCRSESSASERLGKDELTYTLDPTESPLNSKVNGVFSVKALLYDFNYTCVAKAKE
IVKRSETLTVRPKGKLT
NT seq
1136 nt
NT seq
+upstream
nt +downstream
nt
tattcaagataagagacatcaccctgtccatcgagcctgctcccgatgtgactcgggaca
ccaatgtgactctgagatgccaggccatcgtcagcagctctgggccggaggcgctgagtc
gtgagtacagaatatacaaggacggcaacaccatctactccaagaacacaagcacctcag
aggatctcctttaccctttgtccgaggcccgagtatccaactccggaaaatacaagtgca
agatcagcattgagcaggaagacatgacgagtggagccgagaaactcacagtagcaggcc
tgtcaaaaccacttgtccacattaacaagggtgtggtcagtgaaggggaggaggtaacag
ccacatgcacagcgcccggcgagacaggatccttttttttttacttctacgaagactcta
aagagatccaggagaagcaggtaaacgtcaaccaggtggaggccaggcttcacttcagca
gcactggcaaccacacaattcactgtggctatactgtccttgtaacgccagagtccttca
agtcaaaagaaagcctttctgtcactgtttcagtcaatgagcttcccatcgtagcggttt
tggagattttccccaagtccaagatctatgaaggagacaaactccacatcttttgctcgg
tcaaaaacgatcagcgcagctcggaaagtatcaacctgtacctgagccaggggagccagc
ttctcagcattggatactctaaagtcaaccacagcatggtcgctctggcaaaggaccctg
gagagtttgagtgcagattagagatgggaaatgttagaaaaatttacacaaaggcggtgt
cagtgactgagctgttttcagtgcccactctcaccatgtatcctgctgaagtctttcaaa
gggaatacatgacactaaactgcagaagtgagagctctgcctctgaaagactcggcaagg
acgagttgacatacactcttgatccaaccgaaagcccactgaactccaaagtcaacggag
tattttctgtcaaagccctgctatatgatttcaactatacctgtgtagctaaagccaagg
aaatagtgaaacgcagtgaaaccctgactgtacgtcctaaaggtaagctcacgtga
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