Notothenia coriiceps (black rockcod): 104956562
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Entry
104956562 CDS
T04920
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncc03009
]
104956562 (ddx54)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104956562 (ddx54)
Ribosome biogenesis [BR:
ncc03009
]
Eukaryotic type
Pre-60S particles
Helicases
104956562 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DRTGG
PRIMA1
Motif
Other DBs
NCBI-GeneID:
104956562
NCBI-ProteinID:
XP_010782367
UniProt:
A0A6I9P2I6
LinkDB
All DBs
Position
Unknown
AA seq
885 aa
AA seq
DB search
MAERKKKLTKKKSYPGSKDQEDSDFELAAEPKDDDDDDIGKKLLCLSTSDWMSDVEPDTR
MLVRAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTVPVILDGKDIVAMART
GSGKTAAFLVPMFEKLKAPSSTGARALILTPTRELALQTMKFTKELGRFTGLKTALILGG
DRMDDQFAALHENPDIIIGTPGRLMHVIMEMNLKLQSMEYVVFDEADRLFEMGFAEQLQE
IIRRLPDSRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHIRVDDK
QALLLHMLRNIVKPQEQTVVFVATRHHVEYIKELLTLEGIECAYIYSALDQTARKINIGK
FTHRKAMVLIVTDVAARGIDIPMLDNVINYNFPSKPKLFLHRVGRVARAGRSGVAYSMIG
PDEMPFVYDLHLFLGRPVVFATPALPQDSEGVFGRVPQSLLDDESSHLVTAHENSLDLQN
MLHVSENAYKQYLKSRPSPSPESFRRVKNTDLSSMAVHPLLGSGLEKMELERLQIVDAIK
GYKSKATIFEINANNKTQAGGVMRAKRSRDKPLVEKFSRQRDSLAAESLLHQPVKPPPTP
PPPSPPQLTMRTMQCTTQTKMKTIGVFSLVLGGKKRSMEDGFEEWPKHKRSRQSGKDSEF
YIPYRPKDFNSERGLSLGGEGTAFDQQASSAVLDLMGDDGNKLNQNKSVMKWDRKKKRFV
REVGKEDHKKKIKTDGGQVIANKKNRKNFYEEWKKKYKFDDGGAGSDGEEGGGGRGGRRP
GGGRGRGAAGGGGGRGGGRGRGRGNNPNFQSPGGLQQKPGGNRVRSELKSSDQILKQRKK
DQKHQFLQSGALQNVRNKNKKWAGEVKKSGFGRGGPKKGKMKKRL
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaggaagaagaaactgacgaagaagaagagctacccaggcagcaaagatcag
gaggactccgactttgagctggctgcggaacctaaagacgacgacgatgatgatattgga
aagaaactcctatgcctctccacatcagactggatgtcagatgtggagcccgacaccagg
atgcttgtcagagctcagaacaagaagaagaagaagtcaggaggctttcagtccatgggt
ctgagttaccctgtatataaaggtgtcatgaagaagggttacaaagtccccactccgatc
caaagaaagacggtcccagtgattttggatggcaaggatatcgtagccatggcgaggacc
ggcagcggtaagacagctgccttcttggtgcccatgtttgagaagttaaaagccccctca
tccacaggggcccgtgccctcatcctgacccccaccagagagttggcactgcagaccatg
aagttcacaaaagagttggggagattcactggcctcaagactgctctgatccttggtggt
gacagaatggatgatcagtttgccgctcttcatgagaaccctgacataatcatcggtacc
cccggtcgtctcatgcacgtcatcatggagatgaacctgaagctgcagagtatggagtat
gtggtgtttgatgaggctgacaggttgtttgaaatgggttttgccgaacagcttcaggag
atcatccggaggcttccagacagcagacagactctgctgttctctgccactctgcccaaa
ctgctggtggagttcgccagagctgggctgactgaaccagtgttgattcgtttggatgtg
gattctaaactcagtgaccaaatcaagctgtcatttttccatatacgcgtggatgacaag
caggcactgctgctccacatgctgaggaacatagtgaagcctcaggagcagacggtggtt
ttcgtagccaccagacatcacgtagagtacatcaaggagttgctgactttagaaggcatc
gagtgtgcctacatctacagcgccctcgatcagactgccagaaagatcaacatagggaaa
ttcacgcaccggaaagccatggtgctcattgtgacggatgttgctgctcgtggtattgac
attcccatgctggacaatgtcatcaactacaacttcccctccaagcccaagctcttcttg
catagagttggtcgtgtggcacgtgctggacgcagtggtgtcgcttacagcatgattggt
ccagacgaaatgccttttgtctacgaccttcacctcttcctcggaagacctgttgtgttc
gccacacctgcactcccacaagattcagagggtgtgtttggtcgagtccctcagagtctc
ctggatgacgaaagttctcatttggtcacggctcacgaaaactccctggacctgcaaaac
atgctccatgtctcggagaacgcctacaaacagtacctgaagtctcgaccaagcccctca
cctgagtccttcagacgggtcaaaaacacagatctgtccagcatggctgttcatccgtta
ctagggtcaggtttggagaaaatggaactggagcgccttcaaatagttgatgccatcaaa
ggctacaaatctaaagcgactatcttcgaaatcaacgccaacaataagacacaggctggg
ggggtgatgcgggccaagcgctccagagacaaaccgctggtggagaaattcagcagacag
agggacagcctggctgcagagagcctgctgcatcaacctgtcaaacccccccccacccca
ccaccaccatcaccaccacagctgacgatgaggacgatgcaatgcacaactcagacgaag
atgaagacgataggggtgttctcgttggtattaggtggaaaaaagagaagcatggaggac
ggttttgaagaatggccaaagcacaagaggagcagacagtcgggcaaagactccgagttt
tacatcccctacagacccaaagacttcaactctgagagagggttgagtcttggtggagag
ggcactgcctttgatcagcaggcctcctcagctgtcctggacctgatgggcgatgatgga
aacaagttaaaccaaaacaagagtgtgatgaaatgggaccgtaagaagaagcgctttgtg
agagaggtaggaaaggaggaccataagaagaagatcaaaaccgatggtggacaggtcatc
gccaacaagaagaacaggaagaacttttacgaggagtggaagaaaaagtacaagtttgac
gacggtggagctggatcagatggagaagaaggaggaggaggacgaggaggaaggagacca
ggaggaggtcgaggtcgtggtgctgctggtggtggtggtggtcgtggtggtggccgtgga
cgaggtcgtggaaataatcctaacttccagagtcccggaggactgcagcagaaacccggc
ggcaacagagtgcgctcagagctgaagagcagcgaccagatcctgaagcagcgcaagaaa
gaccagaagcaccagttcctacagagcggcgccctacagaatgtccgtaacaagaacaaa
aagtgggccggagaagtcaagaagtcaggtttcggacggggtggtccgaagaagggtaaa
atgaagaagagactctga
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