Notothenia coriiceps (black rockcod): 104956701
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Entry
104956701 CDS
T04920
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104956701 (prpf39)
Spliceosome [BR:
ncc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104956701 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_MalT
HrpB1_HrpK
Focal_AT
DSHCT
TPR_10
TPR_12
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
104956701
NCBI-ProteinID:
XP_010782535
UniProt:
A0A6I9P4U7
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MEDTGLHLSDNTFIGMLDTESPVMESNGDAFLPDLPVLGQTADWSPDQVTPDPLANILPE
DSDESQDAPVQHQQPNEQMDSTELGSVEKAVEQFQIASAQLFQDEQPPPPPPPPPPPQPE
EESEQPSFHKADSGESDQDSQEMTVMPEASTQDSSQEASVAPQVTEEGMELEEPKEATQE
PAVHAEPEPEPPSEFEKLFKACEESPEDFNGWVYLLQYVEQENALPAVRQSFDIFFLRYP
YCYGYWKKYADIEKKHENIQVAEEVYRRGLQAIPLSVDLWLHYLTFIKENSDLSDPETEG
RIRAAYEHAVLAAGTDFHSDRLWESYITWETEQEKLANVTAVYDRILGIPTQLYSQHLQR
FKDHVQNNNPKHFLSEEEFIQMRLELSKASLSAMICESEDKPSAQDDLPPGTEDLADPAQ
RVTEIENMRHKVNEVRQEVSNHNEHEVSKRWAFEEAIKRPYFHVKSLEKNQLNNWKEYLD
FEIENGTPERVVVLFERCLIACALYEEFWTKYAKYLEGYSTDGVRHVYKKACTIHLPKKP
AIHLLWAAFEEQQGNVEEARDILKSLEALVPGLAMVRLRRVSLERRHGNLEEAEAMLREA
MESARNATETSFYAVKLARQMMKVQRSLSKARKVLLDAIEKDQTSPKLYLNLLELEYSGD
VTQNEAEILACFDRALQSQMPLESRLLFCQRKVEFLEDFGSDVNVLGAAYEELQKLQKES
EPAKRKAENGYDSAQEPDSKRQRVEDGSTGAATAATDPAANNTAYNNWYQQQYGGWGQNS
WGQYNQYAQYNQYYPPPPT
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaagatactggcctgcacctctcagacaacacttttattggaatgctggacactgag
tcccctgtcatggagagcaatggggatgcatttcttcctgaccttccggttctaggtcaa
actgcagactggtccccagaccaggttactcctgacccactcgccaacatcttacctgaa
gactcagatgaatcccaggatgctcccgtgcagcaccagcaaccaaatgagcagatggat
tccacagagctgggatctgtggagaaagctgtggagcagtttcagattgccagtgctcag
cttttccaagatgagcaaccaccaccaccgcctccacctccacctccaccccagccagaa
gaagagtcggagcagccatcattccacaaagcagactctggagagtctgatcaagacagc
caggagatgaccgttatgccagaagcttctactcaggatagcagtcaagaggcgagcgtg
gcaccacaggtgacagaggagggcatggagcttgaagaacccaaagaagccacacaagaa
ccggctgttcatgctgagcctgagccagaaccgcctagtgagtttgaaaaactctttaaa
gcatgtgaggagagcccagaggacttcaatggttgggtctacctgctgcagtatgtggag
caagagaatgctcttccagctgtgagacagtcatttgacatattcttcctacgctatccc
tactgttatggctactggaagaagtatgctgatattgaaaagaagcatgagaatatacag
gttgcagaagaggtatacagaagaggcttgcaggccatccctctcagtgtggatctgtgg
ctgcattaccttaccttcatcaaagagaactccgacctgagtgacccagaaacagaggga
cgcattcgagctgcttatgagcatgcagtgcttgctgccggtacagacttccactcggac
cgcctgtgggagtcctacatcacctgggagacggagcaggagaaactggctaatgtcacc
gccgtctatgacagaatcctgggcatcccaacacagctgtattcccagcacctccagagg
tttaaagatcacgtacaaaacaacaaccccaagcacttcttgtcagaagaggagttcatt
cagatgaggctcgagctctccaaagccagcctatcggcgatgatctgcgagagcgaggac
aagccttctgctcaggatgacctaccacccggtaccgaggaccttgcagaccctgctcag
agagtgacggagatcgagaacatgcgccacaaggtgaacgaggttcggcaggaagtgtcc
aaccacaacgaacatgaagtcagcaagcgctgggcttttgaggaagcgattaagagaccc
tacttccacgtcaaatccttagagaagaaccagctgaacaactggaaggagtacctggac
tttgaaattgagaacgggactccggagcgcgtggtcgttctttttgaacgatgcctcatc
gcctgcgcactctacgaggagttctggaccaagtatgcaaaatatctagagggctacagc
actgatggtgtgagacatgtctacaagaaagcgtgtaccatccatttgcccaagaagcca
gcgattcacctgctgtgggctgccttcgaggagcagcaaggtaatgtagaggaggctcgt
gacatcctgaagtccctggaggcattagtccccggtctggccatggtgcgtctgaggagg
gtgagtctggagcggcgccacggtaacttggaagaagcggaagccatgttgagggaggcc
atggagtctgcgaggaatgctactgagacatcgttctacgctgtgaagctggcccggcag
atgatgaaggtgcagagaagtctgagcaaagccaggaaggtgctgctggatgctatcgaa
aaagaccagacaagtccaaagctctatttgaacctgcttgagctggaatacagtggagac
gtgacacagaatgaggctgagatcttggcctgtttcgaccgggccctgcagagccagatg
cccctggagtcccgcctcctcttctgtcagcgcaaggttgagttcctcgaggactttggc
agtgacgtcaatgtgcttggggctgcgtatgaggaacttcaaaaactacagaaagaaagc
gaacccgcgaagaggaaagccgagaacgggtatgacagcgctcaggagcctgactctaag
aggcagcgggtggaggacggttcaacgggtgcggcaacagcagcgacggacccagcggca
aacaacactgcatacaacaactggtaccagcaacagtacggtggttggggacaaaactcc
tggggacagtacaaccaatatgcccagtataaccagtactacccccctcccccaacataa
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