Notothenia coriiceps (black rockcod): 104956834
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Entry
104956834 CDS
T04920
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncc03009
]
104956834 (ddx55)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104956834 (ddx55)
Ribosome biogenesis [BR:
ncc03009
]
Eukaryotic type
Pre-60S particles
Helicases
104956834 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DUF4217
Helicase_C_2
DEAD
Motif
Other DBs
NCBI-GeneID:
104956834
NCBI-ProteinID:
XP_010782687
UniProt:
A0A6I9P3E6
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
YFLPLKDSFFVSSLNNILGFLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVA
ATSMQKTPSRLSNYYTICRSENKFNHLVTFLRQHKHEKNLVFFSTCACVEYYGRALEVLV
KKADVHCIHGKMKNKRNKIFADFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSNASA
FVHRCGRTARIGNQGNALVFLLPMEEAYVNFLSINQKCPLQKMVLSGDVPDVLPKVKTLA
LADRAMFDRGMRAFVSYVQAYAKHECSLIFRSKDLDLATLARGFALLRLPKMPELRGDTL
PDFKETTVDTDKIRYKDKQREKLRQKLLLELKDQVKISYPKKNFIKNKSWSKQRSKKERR
EKRSAKRRRDEGSDVEDEEMQELLNDTRILKKLKKGKITEEDFENQISAQISGPKSKHKA
GAATHEGSGGEEV
NT seq
1303 nt
NT seq
+upstream
nt +downstream
nt
gtattttctaccactgaaagactctttttttgtgtccagtctgaacaacattttgggctt
cctgcccaaacagaggcgtacaggcttgttctcagcgactcagactcaggagctggagaa
gctggtgagggccggcctcagaaacccggtgcgcatcaccgtcaaggagaaaggtgtagc
tgccacctctatgcagaaaacaccctccagactctccaactactacactatatgtcgatc
agagaacaagttcaaccacctggtgacgtttctaaggcaacacaagcacgagaagaacct
ggttttcttcagtacgtgtgcctgtgtggagtactacggtcgggctctcgaggttctggt
caagaaagcagatgtccactgcatccacggcaagatgaaaaacaaacgcaacaagatctt
tgctgacttccgggccctgaaaagtgggatcttggtgtgtactgatgtcatggccagagg
catcgatatccccgatgttaactgggtgctgcagtacgatcctcccagcaatgccagtgc
gtttgtacatcgatgtggacgtacggcacgtatcggcaatcagggcaacgcccttgtttt
tctgctgccaatggaggaggcctatgtcaattttttgtccatcaatcagaaatgccccct
ccagaagatggtcctctcaggagatgttccagatgtgctgcccaaagtgaagactctagc
tctggcagaccgcgccatgtttgacagaggcatgagagccttcgtgtcctacgtccaggc
ctacgccaaacacgaatgtagtctcatcttcaggtccaaagatctggatttggccacctt
agcccgcggcttcgccctcctccgcctgccgaagatgcccgagctgagaggggatacact
ccctgattttaaggagacgacagtggacacagacaaaatccgctacaaggacaagcaaag
ggagaagctgagacagaagttgctcctcgagttgaaagatcaagtgaagatctcgtatcc
caaaaagaacttcatcaagaataagtcctggtcgaaacagaggagcaagaaggagcgcag
ggaaaaaaggtccgccaagaggaggcgtgacgagggctctgatgtggaggatgaagaaat
gcaagagcttttaaatgacactcgcatcctcaagaaacttaagaaagggaaaatcacaga
ggaggacttcgagaatcagatatcagctcagatcagcggaccaaagtcaaaacacaaagc
aggagcagcgacacacgagggctccgggggcgaggaggtgtga
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