Notothenia coriiceps (black rockcod): 104956933
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Entry
104956933 CDS
T04920
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04110
Cell cycle
ncc04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
104956933 (smc1a)
04114 Oocyte meiosis
104956933 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncc03036
]
104956933 (smc1a)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
104956933 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
104956933 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_hinge
SMC_N
AAA_23
AAA_15
AAA_29
AAA_21
SlyX
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
104956933
NCBI-ProteinID:
XP_010782815
UniProt:
A0A6I9P5K2
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAYVSMVYQEDNGEERNFTRGIIGSSSEYRINSKVVGLPEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNETEIEKLNK
ELAQRNKEIDKDRKKMDNVEEELKDKKKELGRLMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAARKSLQNAQKMYKKRKGDMDELDKEMQAVDSTKQEFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRMEEELTEEVEGAKRRIDEINTELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKDQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIHSREKEITDLQDRMNLVEDEVFIEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQVDYEKNQLKEDQEKVMMWEQ
TVKKDDAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHDMEEIRKKLGG
ANKELTQLQKEVTAIETKQEQKRSDRHNLLQACKMQDIRLPLRSGTMDYMSQGEGSSQPE
ESNSQRTSSTVLAKEALIEIDYGILTEDLKDALSEEEFKGETNTLQQRLNEQQSILQRIS
APNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERYDRFNNCFESVATNI
DEIYKALSRNSSAQVCLRPVNPDGGYLNSFTWGTKSSERLKASQTMKPVQNHIICKKSSG
AIPSVPTRTARPPPHDYPSKPPSDPKLTPHVCRD
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgggttatttaaaactgatcgagatcgagaactttaagtcgtataaaggaagacagatc
attggaccttttcataagttcacggctatcatcggacccaatggatctggaaagtccaac
cttatggatgccatcagcttcgtgttggcagagaagaccagcaacctgcgagtgaagact
ctgaaggatctgatccatggagcacctgtagggaagcctgctgcgaacagagcctatgtc
agtatggtgtaccaggaggataatggagaggagcgcaacttcacaaggggaatcattggt
tcctcctccgagtaccgaatcaacagcaaggtggtgggcctgcctgaatacagtgaagaa
cttgagaaacttggcattctaatcaaggctaggaacttcctcgtcttccagggagctgtg
gagtctattgccatgaagaaccctaaggagcgaacagctctgtttgaggaaatctctcgg
tctggagagctggcccaggagtacgaccgcaggaagaaggaaatggtgaaagcagaggag
gacacgcagtttaattatcatcgtaagaaaaacattgctgctgagcgcaaagaagccaag
caagagaaagaggaggctgagcgttaccagcgtttgaaagacgaggtggccagggctagt
gttcagttgcagctctttaagctgtaccacaatgagactgagattgagaagctgaacaaa
gagctggcccagcgcaacaaggagatcgataaggaccgcaaaaagatggacaatgtggag
gaggagctgaaggacaagaagaaggagctgggccgactgatgagagagcagcagaccatt
gagaaagaaatcaaagaaaaagactctgagttgaaccaaaagaggccgcagtacatcaag
gcaaaagaaaacacctcacacaagatcaagaagctcgaggcagcacgcaagtctttgcaa
aatgcccagaagatgtacaagaaacgcaagggggacatggacgagctggacaaagagatg
caggcggtggactcgaccaagcaagagtttgaggagcggatggaggaggaggcgcagagc
cagggccaggatctcaccctggaggagaaccaggtcaagcaataccatcgtctgaaggag
gaggccagtaagcgagctgccaccctggctcaggagctggagaagttcaaccgcgaccag
aaggccgaccaggaccgcctggacttggaggagaggaagaaagtagagacggaggctaaa
atcaaacaaaagattcgtgaaattgaggaaaaccagaaacgtattgagaaattagaggat
tatatcaccaccagcaggcagtcactggatgagcagaagcgcatggaggaggagctgacg
gaggaggtggagggtgccaaaaggagaattgatgagatcaacacagagcttaaccaggtg
atggagcagctgggagacgccagaatcgacagacaggagaacagtcgccagcagcgcaag
gcggagatcatggagagcatcaaaagactctaccctggctctgtgtatggtcgtcttatt
gacctgtgccagcccacccagaagaagtatcagattgctgtgaccaaagtgttgggcaag
aacatggacgccatcatcgttgactcagagaagacgggcagagattgtattcaatacatc
aaggagcagagaggagagcccgagaccttccttcctctcgactacctggaggtgaaacca
acagatgagaagctgagagagcttcgaggagccaaactggtgattgatgtgatccgctat
gagcctccacacatcaagaaagccctgcagtatgcctgtggcaacgccctggtctgtgac
aacgtagaggatgcacggaggatcgctttcggagggccatacagacacaagacggtagcc
ctcgatggaactctgttccagaagtctggagtcatctctggaggagccagcgacctgaag
gccaaggccaggcgctgggatgagaaggcagtcgacaagctcaaggagaagaaagaaaaa
ctcactgaagagctcaaggaccaaatgaaggccaagaggaaggaggcggagctgcgtcag
gtgcagtctcaggcccacggtttgcagatgagactcaagtactcccagagtgatctggaa
cagaccaaaacccgccacctctccctcaacatgcaggagaaatctaagctagagagtgag
ttggcaaactttggccctcgcatcaacgacatcaaaaggatcatccattcccgggagaag
gagatcacggacctgcaagaccgcatgaacctggtggaggatgaggtgtttattgaattc
tgtaaggagattggagtgaggaacatcagagagtttgaggaggagaaggtgaagaggcag
aatgagattgcaaagaagcgtcttgagtttgagacccagaagacccgtctgggtatccag
gtagactacgaaaagaaccagctgaaggaggaccaggagaaagtcatgatgtgggagcag
actgtcaagaaagacgacgctgaaatagaacgactaaagaaggaggagcacagacacatg
aagatcattgatgagacaatggcccaactccaggacctgaagaaccagcacctcaccaag
aagtctgaagtcaacgataagaaccatgacatggaggagatccgcaaaaaactgggtggc
gccaacaaggagttgactcagctccagaaagaggtcacagccattgagaccaaacaagag
cagaagcgcagcgatcgtcacaacttactgcaagcctgcaaaatgcaggacatcaggttg
cctctgcgatcaggaacaatggattatatgagccagggagaggggagctcccagccagaa
gagtccaacagccagaggacgtccagcactgttctggctaaagaggctctcatagagatc
gactatggtatcctgactgaagaccttaaggatgcactgtcggaggaagagttcaagggc
gagaccaacacactgcagcagcgtctgaacgagcagcagagcatcctccagaggatcagt
gcacccaacatgaaggccatggagaagctggagagcgtccgggacaagttccaggagacc
agtgatgagtttgaggctgctcgtaagagagccaagaaagccaagcaagcctttgagcag
attaagaaggagaggtatgatcgcttcaataactgctttgagtccgtcgccaccaacatc
gatgagatctacaaggccctctcacgcaacagcagtgcccaggtatgcctccgcccagta
aaccccgatggaggatacttgaactccttcacttggggaaccaagtccagtgagaggctg
aaggcgtcgcagacgatgaagccagtccagaaccacatcatctgcaaaaagtccagtggt
gcaattccttcagtcccgacccgaactgctagaccccctccccacgactacccctcgaag
ccgcccagtgatcccaagctcactccacacgtgtgccgcgattag
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