Notothenia coriiceps (black rockcod): 104957080
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Entry
104957080 CDS
T04920
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104957080
Cell adhesion molecules [BR:
ncc04515
]
Cadherins
Protocadherins
104957080
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
TMEM154
BAMBI_C
Motif
Other DBs
NCBI-GeneID:
104957080
NCBI-ProteinID:
XP_010782996
UniProt:
A0A6I9PA45
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All DBs
Position
Unknown
AA seq
1187 aa
AA seq
DB search
MQPGKMQGLFVTRMWKVVAVLAMATQHVTSNTLKYQIHEEQKVGTVIARLKEDVTDVVAK
LPSSVSLRFRAMQRGGSSFLTVREQDGEISIRTKIDREKLCEKNLNCSIQFDVLTLPTEH
LQLFHVEVEVLDINDNAPLFARAVIPIEISESAAVGARIPLDSATDPDVGENSLYTYALE
PNNFFKIDIQSRTDGARYAELVVLRELDREVRSGYELKYTASDRGVPPRTGSTLLKISVS
DSNDNSPIFEKSSYVINLPENAPVGTLIIDMNATDADDGTNAKIVYSFSSHVSPKIMETF
KINPDSGRLTLIRRVDYEAVNSYDIDVQAQDMGPNSMPAHCKILVKLVDVNDNKPDISIN
LMSSQGNGDAAYISEASPLDTFVALVRVEDFDSGLNGEVECKLHGQGYFKLQKSYENNYM
ILTNVSLDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHVTDENDNPPRFEKGQYEIFKSE
NNAPGAYLTSIMATDPDLDNNGQVSYSILENSVHGSSISTYVTIDPSNGAIYALRTFDRE
DVSRITFVVQAKDAGKPPLVSNATVILNILDENDNPPVIVVPQLWNFTADVPASKFTDAG
HLVTAIRATDRDTGVNAELICSILSGNEEGFFMIDPRTCEIHANASLENFPHEHAELTVV
VRDQGRENLSAKAALKITLYENMENHVQVMDQGESSLDASLIIIISLGAICTVLLVIMVL
FAASCNREKKDTRHSYNCRVAESTHQHHPKKPARQIHKGDITLVPTVNGTLPIRAHHRSP
SDTPPMDRAQMGSRQNHHSRQSLNSLVTISSNHIPESFALELAHATPPVEQVSQLLSMLH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCDMGRESPVDRLLLG
EGFSDLIHLEMHHRLHPAMRLCTDECRILGHSDQCWMPPLTSPASCDYRNNMYIPGEESS
QQPQQLDDDESSVDSERRKSFSTFGKEPGSEEAGVPGDGSDACAAAGGGAGSLLTEMNSV
FQRLLPPNMDSYAECTETSPPSSSSTAERGSGRGGNIAGNHSNNTVPQDNRRGLLPGGKA
PAYPPGVAAWAANTHYLNPGSGSVGNNHVTPSPSSSSTPTSTSTNGQPPHLKWLPAMEEI
PENYEEDDFDGVFHQGGKRSESRHEPGMDASELVHEINKLLQDVRQN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaggaaaaatgcaaggactatttgtgacaagaatgtggaaagttgtggctgtt
ttggcaatggcgactcaacacgtcaccagtaatacattgaaataccagattcacgaagag
cagaaggtgggcacagttattgcccgtttgaaagaagatgtcacggatgttgtggcaaaa
cttccgagctccgtgtcgctgcgcttcagagccatgcagagggggggctcgtctttcctc
acggtgcgcgagcaggacggagaaatcagcatcaggaccaaaattgaccgtgagaaactc
tgcgaaaagaatctcaactgttctattcaatttgacgtgctgacgctccccacggagcac
ttgcagctttttcacgtcgaggtggaagtgttggacatcaacgataacgcacccctgttc
gcccgtgccgttatccccattgaaatctctgagagcgcggctgtgggtgcgcgcattccc
ctggacagcgccacagatcccgatgtcggggaaaactcactatacacgtatgccttagag
cccaacaacttctttaagattgatatccagtccaggactgacggggctagatatgcagag
ctggtggtgctcagggagttggatcgggaggtgcggtccgggtatgaacttaaatacacg
gcttctgatcggggcgttcccccaagaacaggttcgaccctccttaaaatcagtgtcagt
gactcaaacgacaatagcccaatttttgaaaagtcatcatatgtcataaatctcccagaa
aacgcacctgttggcacactgatcattgacatgaacgccactgacgcggatgacggcacc
aacgccaaaatagtctactcattcagcagtcacgtgtcccccaaaataatggagacattc
aagattaatcctgacagtggccgtctgactctcatcaggcgcgtggactatgaggctgtt
aactcttatgacattgatgtccaagcacaggatatgggtcccaactccatgccagctcac
tgcaagatcctggtcaaactggtggacgtgaatgacaataaacctgacataagcatcaat
ctcatgtcctctcaaggaaatggggacgcagcttatatatctgaggcttctcctttggac
acgtttgtagctctggttagggtggaggactttgactctgggctgaatggtgaagtggag
tgcaagcttcacggtcaaggatatttcaaacttcagaaatcctacgagaacaactacatg
attttgacaaatgtgtccctggatcgagaaaagaggtcagagttcagtctaacagtggtg
gccgaggaccgagggacccccagtctctctactgtcaaacattttactgtgcatgtgact
gatgaaaatgacaaccccccacggttcgagaagggtcagtatgagatatttaaatcggag
aacaatgcccctggagcgtatctgacctccatcatggccactgatcctgatctggacaac
aatggacaggtgagctactccatcttggagaactctgttcatgggagctccatctccacc
tacgtcactattgacccctccaatggcgccatctacgctctgcgcacatttgatcgtgag
gacgttagtcgcatcacgtttgttgtgcaagccaaagacgcggggaaaccaccgctggtc
agcaacgccacggtaattctgaacattctggatgaaaacgacaatcctccggtcatcgta
gtcccccagctgtggaacttcactgctgacgtgcctgcgtcaaagttcacagatgccgga
cacttagtaaccgctattagggcgactgatcgcgacaccggggtcaatgccgagctcatc
tgctccatcctcagcggcaacgaggaaggattcttcatgattgacccaagaacgtgtgaa
atccacgccaacgcaagtttggagaacttcccccatgaacacgctgagttgactgtggtg
gttagagatcagggtagggagaacctcagtgctaaggcggctcttaaaatcaccctctat
gagaacatggagaatcacgtccaggtgatggaccagggggagtcgtccctcgacgcttcc
ctgatcatcatcatctccttgggagccatctgcaccgtgctcctggtcatcatggttttg
ttcgccgccagctgtaaccgggagaagaaggacacgaggcactcgtacaactgccgggtg
gcagaatccacccaccagcaccatcccaagaagcctgcccgccaaatccacaaaggtgac
atcacccttgttcccacggtgaatggcacgctgccaatcagagctcaccaccgctcgccg
tcggacacgccccccatggaccgagcccagatggggagccggcagaaccaccacagccgc
cagtcactaaacagcctggtgaccatctcgtccaatcacattccagagagcttcgccctg
gaactggcacacgcaactccaccagtggagcaagtctcacagcttctgtccatgctccat
cagggccagtaccagcccagacccagtttccgtggcaacaaatactcccgcagctacaga
tatgcattacaagacatggacaagttcagcctgaaggacagtggccgtggggacagcgag
gcgggggacagtgactgtgacatgggtcgggaatcccctgtggacaggctgctgctgggg
gagggcttttctgacctcatacacctcgaaatgcaccatcgactccacccagctatgaga
ctgtgcacggatgaatgtcgcatcctgggacactctgaccagtgttggatgccccccctt
acttcgcctgcttcctgcgactaccgcaacaacatgtacatccccggggaggagtcctcc
cagcagccccagcagctcgacgacgacgagtcctctgtcgattcggagcgccgcaagagc
ttctccactttcggcaaggagcccggcagcgaagaggcaggggtccccggagatgggagt
gacgcttgtgcggctgccggaggaggggctggttccctcctcaccgagatgaactctgtg
ttccagaggctcctcccccctaacatggactcgtacgcagagtgcactgaaactagcccg
ccttcgtcctcgtcgaccgctgagaggggaagcgggcgcggtggcaacattgcaggtaac
cacagtaacaacactgttcctcaggacaaccgcagaggcttgttgccgggtgggaaagcc
cccgcttaccctccgggtgtggctgcatgggcggccaacacccactaccttaaccccgga
agtggaagtgtgggaaacaatcacgtcaccccctctccttcctcatcctccacgcccact
tccacctccaccaatggacagccaccgcacctcaaatggctgccggccatggaggagatc
ccggagaattacgaggaagacgactttgatggcgtcttccatcagggcggcaagcgaagt
gaaagccgccatgagcccggcatggacgctagcgagctggtgcacgagatcaacaagctg
ctacaggatgtcaggcagaactaa
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integrated database retrieval system
