Notothenia coriiceps (black rockcod): 104958095
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Entry
104958095 CDS
T04920
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104958095 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ncc04054
]
104958095 (dhx58)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104958095 (dhx58)
Pattern recognition receptors [BR:
ncc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
104958095 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
RIG-I_C-RD
AAA_22
NNH1
Motif
Other DBs
NCBI-GeneID:
104958095
NCBI-ProteinID:
XP_010784105
UniProt:
A0A6I9P8S7
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MAAFELYAYQKEVAERALHKENIIIWLPTGGGKTRAAVYVAKKHLEATPRAKVVVLVNKV
HLVDQHYKNEFKPHLGRDYKVLPVSGETVEKDFFGKVLQDMDVVICTAQLLHNALIDKDE
DKHVELSDITLLIIDECHHTNKDAVYNKVMTFYLEKKLKGEKSLPQILGLTASPGTGGAR
DLQKATEHILQICANLDSAIVSTTNFVAELNEKVPRPIKQFDIVDPRPEDPFGDQLKSMM
LMIHEFMNIPPGFRLRQCGTQEYEADVVELEKIGVKTEDRMLAQCALHLREYNDALLIND
TLRMIDAYHCLVEFYRNKITREIEGTDIFLAGLFQENQAELEILVKDSRYGNPKMDKLKS
TLLEQFVPRENSKGIIFSKTRKSTHCLNDWVLNDKELKEAGIKPAILTGAGNGISHMTLN
EQSETIRNFRQGAVNLLVSTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAKDSL
YSVVAQSGGPEVRRERTNDYLKELTEKAIAKVQEMCPREFSKKIAALQREAAIQRSLAEK
LKMEKRSRYPAASFNLVCRSCFTSVAPGSDLRLLDGVHYVNVNPDFE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttttgaactgtatgcataccagaaggaagtggctgagagggctcttcacaaa
gaaaacatcatcatttggctgccgacaggaggtggaaagacccgagctgctgtctatgtg
gccaaaaaacacctggaggccaccccacgggccaaggtggtggtcctggtgaacaaggtt
caccttgtagatcaacattacaaaaatgagttcaaacctcacctgggccgagactacaaa
gtgttgcctgtcagcggagagacagtggagaaggacttctttgggaaagtgttgcaagat
atggacgtcgtcatctgcacagcacagcttttgcataatgctctgatagacaaggatgag
gacaaacatgtggagctctcggatattactctactgataatcgatgagtgccaccacacc
aacaaagatgcagtctacaacaaggtgatgacattctacctggagaaaaaactaaaagga
gagaaatcattgccacagatcctgggtctcactgcatcaccggggacagggggtgcaagg
gacttacaaaaagctacggagcacatactgcagatttgtgccaaccttgactcagccata
gtttcaactacaaactttgtcgctgagctgaatgagaaagtccccaggcccatcaagcag
ttcgacattgtggacccaagacctgaggatccgttcggggatcaactgaagtccatgatg
ctgatgatccatgagttcatgaacattcctccaggcttcagactgagacagtgtggcact
caagagtatgaggcagatgtggtggaactcgagaagataggagtcaaaacggaagacaga
atgctagcacaatgtgcacttcacctccgagagtacaacgatgccttgctcatcaacgac
acgctgcggatgatagatgcttatcactgcctggtggagttctacaggaacaagataacc
agagaaattgaaggaacagacatcttcctggcggggcttttccaagagaatcaggcggag
ctggagatattggtaaaagattctcgctatgggaacccaaagatggacaaactaaaaagc
actctgctagaacagtttgttccaagggagaattcgaaggggatcattttcagcaaaacc
cgtaaaagcacccactgcctgaacgactgggttctcaacgataaagagttaaaggaagca
ggtatcaagccagccatcctcactggagccggtaacggtatctctcacatgacattgaac
gagcagtcagaaacaatccgcaatttccgccaaggtgctgtcaacctcctggtctccacc
agtgtggcagaagaaggcctcgacattcctgaatgcaacctggtggtacgctacggactg
cttacaaatgagattgcccagcagcaggccagcggacgagcccgagcaaaagacagcctg
tattcagtggtcgcccagagtggggggccggaagtgaggcgggagcgcaccaatgattat
ctgaaagagctgacagaaaaagctattgctaaggtccaagagatgtgcccccgagagttc
tccaaaaagatagctgcactgcaaagggaggcagctattcaaaggagtcttgcagagaaa
ctcaaaatggagaagaggagtcgctaccctgctgccagtttcaacctggtgtgtcgaagc
tgcttcacctctgtggcccctggcagtgacctgagactcctggatggtgtgcactatgtc
aacgtcaaccctgactttgagtga
DBGET
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