Notothenia coriiceps (black rockcod): 104958138
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Entry
104958138 CDS
T04920
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03018
RNA degradation
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104958138 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
104958138 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104958138 (lsm4)
03041 Spliceosome [BR:
ncc03041
]
104958138 (lsm4)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104958138 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
104958138 (lsm4)
Spliceosome [BR:
ncc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104958138 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
104958138
NCBI-ProteinID:
XP_010784151
UniProt:
A0A6I9PDX5
LinkDB
All DBs
Position
Unknown
AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGPQQNKQQGKGRGGGVGRGLFGGRGRGMS
GPGRGQQQQLQLQQDKKPGKPQGMKNQH
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactatctctgcttaagactgcccagaaccatcctatgctggtggagctgaaa
aatggagagacgtataacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctcgagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagtaccatcaagtacctgcgaatccccgatgagatcatcgacatggtgaag
gaggaggtggtgtcgaagggccgcggacgtggaggcccccagcagaacaaacagcagggc
aaaggaagaggaggaggagtcggccgaggtctgtttggcggtcgtggcagagggatgtct
gggccgggccgaggccagcagcagcagctgcagctgcagcaggataagaaaccaggcaaa
ccacagggcatgaagaaccagcactga
DBGET
integrated database retrieval system
