Notothenia coriiceps (black rockcod): 104958147
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Entry
104958147 CDS
T04920
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03013
Nucleocytoplasmic transport
ncc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104958147
03015 mRNA surveillance pathway
104958147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104958147
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104958147
5.6.2.5 RNA 5'-3' helicase
104958147
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104958147
mRNA cycle factors
Common to processing body (P body) and stress granule
104958147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_1B_dom
UPF1_Zn_bind
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
ATPase
Helicase_RecD
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
104958147
NCBI-ProteinID:
XP_010784161
UniProt:
A0A6I9PDY8
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MGQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEEL
WKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDN
ITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNY
GDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLG
HEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY
HLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFLALHNQISN
MDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAK
MQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFER
LVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQPDKPMF
FYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYM
QFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAK
YGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGG
RFMSTAMYDAREALIPGSAYDRSNAGGRPSNMYFQTHDQIGMIGAGPGHMAMNIPIPFNL
VMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGPNSQASQDGAS
QPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERA
YQHGGVTGLSQY
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggggcagccctgtgccagccagagtagtctgaaggacatcaactgggacagctcacag
tggcagcccctgatccaggaccgctgcttcctgtcctggctggtaaagatcccatcggag
caggagcagcttcgcgcccgtcagatcactgcccagcagatcaacaagttggaggagctc
tggaaggacaaccccactgccaccttagaagacctggagaagcctggagtggacgaggag
ccccagcatgtgctgctacgctatgaggacgcctaccagtaccaaaacatctttggccct
ttggtcaaactggaggctgactatgacaagaagcttaaggagtcccagactcaagataat
ataacagtcaggtgggacctggggctgaataaaaagcggattgcctatttcacactgccc
aagacggactcaggtgatatgcggctgatgcaaggtgacgagatctgcttgcggtacaag
ggagacctggccccgctgtggaaaggcattggtcatgtcatcaaagtccctgacaactat
ggagatgaaattgccattgagctgaggagcagtgttggagcacctgtggaaatcccacac
aacttccaggtggactttgtgtggaagtccacatcctttgacaggatgcagagcgccctg
aagacgtttgcggttgacgagacctccgtgtctggttacatttaccacaaactgctgggc
cacgaggtggaggatgtgaccatcaagtgccagctgccaaagcgcttcactgcccagggc
ctgcccgacctcaatcactcacaggtgtacgctgtgaagacggtgctgcagaggcctctc
agtctgatccagggtcctcctggcactgggaagacggtcacctctgccactatcgtctac
cacctgtcccgacagggcaacggaccagttctggtttgtgctcccagtaacattgctgtg
gatcagttgactgagaagattgacaagactggactgaaggtcgtcaggctgtgtgccaag
agcagggaggccatcgagtcaccagtctccttcctggctctgcacaaccagatcagcaac
atggacagtatgccggagcttcagaaacttcagcagctgaaggatgagaccggtgagctg
tcgtctgccgatgagaagcgttacagggctctgaagcgcaccgctgagagggagctgctc
atgaatgctgatgttatctgctgtacctgcgtcggcgctggagaccctcgtctggccaaa
atgcagttccgctccatcctgattgatgagagcacccaggccaccgagccagagtgcatg
gtgcccgtggtgcttggagccaagcagctcattctggtgggtgatcactgccagctcggt
cccgtggtgatgtgtaagaaagcagccaaagcaggtctgtcccagtccctgtttgagcgc
ctggtggtcctggggatccggcccatccgcctgcaggtccagtaccgcatgcaccctgct
ctcagcgccttcccctccaacatcttctatgagggctctctgcagaacggagtcactgca
gctgaccgcatcaagaaggggttcgacttccagtggccacagcccgacaaacccatgttc
ttctacgtgactcagggtcaggaggagattgccagctccggaacctcctaccttaacagg
acggaggctgccaatgtagagaagatcaccaccaggctgctgaaggctggagccaaacct
gaccaaatcggcatcatcaccccgtacgagggtcagcgctcctacctggtccagtacatg
cagttcagcggctccctgcacaccaaactctatcagcaagtggaaattgccagtgtggac
gccttccagggcagagagaaggacttcatcatcctgtcttgtgtgcgtgccaacgagcac
cagggcatcggcttcctgaacgacccgcgtcgtctcaacgtggcgctgaccagagccaag
tacggtgtgatcatcgtgggaaaccccaaggccctctccaagcagccgctgtggaacaac
ctgctgaacaactacaaagagcagaaagtcctggtggagggacccctcaacaacctgagg
gagagcctcatgcagttcagcaagccccgcaaactggtcaacaccatcaaccctggcgga
cgttttatgagcactgcaatgtacgacgcccgcgaggccctcatcccaggctccgcctac
gaccgcagcaatgccggcggacgtccgtccaacatgtactttcaaactcacgaccagatt
gggatgattggggcaggacccggtcacatggctatgaatattcccattcccttcaacctg
gtgatgcccccaatgcctccgcccagttacctggggcagaccaacggccctgctgcaggt
cgtggagcgatgaagggtaagcctggacgtggcgggcggcagagggtccgagggtcggcc
caccagggggccagtcagggtaacggaccaaacagccaggccagccaggacggggcctcc
cagcccttctcccaggggccgctgactcagggctacatcaacatgagccagccctctcag
atgagccagcctggcctctcccagccggagctctcccaggacagctacctaggcgatgag
ttcaagtcccagatcgacgtggctttgtcccaggactctacttaccagggtgaacgtgca
taccagcatggtggggtgactggactgtcacagtactag
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integrated database retrieval system
