Notothenia coriiceps (black rockcod): 104958201
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Entry
104958201 CDS
T04920
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
104958201 (shoc2)
SSDB
Ortholog
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GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_LRWD1
LRR_9
LRR_13
LRR_5
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
104958201
NCBI-ProteinID:
XP_010784225
UniProt:
A0A6I9PE59
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSSTLGKEKDSKEKDPKGGPAGKEREKEAKALAGLVKDGGKETKTKGKDAKDGKKDTSSS
TPGVAFSVDNTIKRPNPAAGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHMLPTSIK
ELTQLAELYLYSNKLQSLPAEVGCLSGLVTLALSENSLTSLPDSLDSLKKLRMLDLRHNK
LREIPAVVYRLTSLTTLYLRFNRITTVEKDIRNLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLASINRLGLRYNRLSAIP
RSLAQCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VCGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDIQKLVLTN
NQLTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLRSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtactttaggcaaagaaaaagattcgaaagaaaaggaccccaaaggtggtcca
gctgggaaagaaagggaaaaagaggccaaggctctagccggcttagtcaaagatggtggt
aaagaaacgaagaccaaagggaaagatgccaaagatggaaagaaggacaccagcagctca
acaccgggtgttgccttctcggttgacaatacgattaagcggccaaacccggcagcaggt
acacgcaagaagtccagcaatgccgaggtgatcaaagagctcaacaagtgccgggaggag
aactcaatgagactggacctatctaaacggtccattcacatgctgcccacctccattaag
gagttgacgcagctggctgaactctacttatacagcaacaagctgcagagcctgccggct
gaggttggttgtctgtccggcctggtcactttggccctgagcgagaactccctgaccagt
ttgcctgactccctggactcccttaagaagcttcgaatgctcgacctccggcacaacaag
ctgagagagataccggctgtcgtctaccgattaacatctctgaccacgctgtacctgcgc
ttcaaccgcatcacaaccgtggagaaggacatccgaaacctttccaagctcactatgctc
agcattcgggagaacaagattaaacagctgcctgcagagataggggagctatgcaatctc
ataactctggatgtggcacataaccagttagaacacctaccgaaggagatcgggaattgc
acacagataaccaacctcgacttgcagcacaatgagctcttggacctaccagagactata
ggcaaccttgcaagcataaatcgcttagggctgcgatacaatagattgtcagcgatcccc
agatcattagcccaatgccgagagctggaggagctaaacctggaaaacaacaacatttcg
gtgttgcctgaaggcctactttcaagtttggtcaacctaaccagtctaacactggcaagg
aactgcttccagtcgtaccctgtggggggaccatcccagttctccaccatctactccctc
aacatggagcacaaccgcatcaacaaaatcccctttggcatcttctccagggccaaagtg
ttaagcaagcttaacatgaaggacaaccagttaacatcgctgccgttggactttggcaca
tggacgagcatggtcgagcttaacctggccaccaatcagctgacaaagatcccagaggac
gtctgtggtttagtctctctggaggtgttaatattgtccaataatcttctcaagaagtta
ccacatggtattgggaatttgagaaagctgcgggagctcgacttggaggaaaacaagttg
gaatctctacccaatgaaattgcttatcttaaagatatacagaaattggtgttgacaaat
aatcagctgaccacgttacccagaggcatcggccacctcaccaaccttactcatctgggt
ttgggggagaacctgctgcaacacctcccagaggaaataggtacactggagaacctggag
gagctgtacctcaacgacaaccccaacctgcgcagcctcccgttcgagctggccctctgc
agcaagctgtccatcatgagcatcgagaactgtcccctcagccacctgccgccccagatt
gtcgcagggggcccctccttcatcatccagttcctcaagatgcagggaccgtaccgtgcc
atggtctga
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