Notothenia coriiceps (black rockcod): 104958992
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Entry
104958992 CDS
T04920
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04010
MAPK signaling pathway
ncc04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104958992
04020 Calcium signaling pathway
104958992
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104958992
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
104958992
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
YcgL
Motif
Other DBs
NCBI-GeneID:
104958992
NCBI-ProteinID:
XP_010785140
UniProt:
A0A6I9PBI3
LinkDB
All DBs
Position
Unknown
AA seq
1319 aa
AA seq
DB search
MTDGQMRERREVALTIQENRVSTEEEQLPYPNLASVVFRSLTQTTRPRNWCLQIACGPWM
EYMSILMILLNCVSLGMYKPGEGKSYKLEVFDVFVFAFFLVEMTVKMVAFGVYGYRNSYL
QNKWNKLDFFINIAEAFGYFFNILGIDFLLSQVFGPLRLISRVPSMRDVVTVLIDVVPML
AIVLVIFLFVIHIFAVAGVQLWAGQLRNRCFLGDDIPTNNSMSLSPYFETQFDEKVPFVC
TREGKSGTQHCRDIPPYQENGGTCSLAAPHKASAANWGIPTVASHTCVNWHSFYNVCRAS
EKNPHRGVINFDNIFYAWITIFQVVTLEGWAEIMFFIMDAHSFLSFLFFMLVTVMGSFII
VNVCAVVIATQFLDNMKLKSEEPSPGAARNTLPLLCRRFACWLRRFNSIITIAVEHHNQP
PKMTHVLHICNIVFTFVFFVEMTLKLIALRFKYFFDLNNIFDFAIVIVSVWELIAETDGR
LSVLRAFRLLRFVRLLHFLPYLLRQLLVLKRTIAEAGPLCMLLLLFTFVCSVLGMHLFGG
QFIFKDPQGDIIIERKNFDTLLWSMVTVFQILTQEDWNLVLYNAMTATTPWAFLYFVTVI
MLGKHVLLNILVGIVVQSFQEKESSECTQDSSRIDEDFNDSVTSFTSETDPSRPSQSPLT
SEKDTEPANTQEDNKPLTCIQQMLHWCKEHEEWAFYVFSPQNRFRIYCQRLIYHKLFDNT
VLLFILLSCVTIAMERPGIHSDSTERWILNMSRYVFSGVFLVEMLFKVVALGVFFGKDSY
CSSSWNVMDGLLVILSVIHIIISLASSGENNMLGILKVLRLLRTLRPLRVIKRAPKLKLA
VDALITSIKPIGNIVFICCTFFFFYSILGVQLFKGKFFHCLGQYTKNITNKSDCLLANYL
WVQKRYNFDSLPQALMSLFVMYSKDGWVNLMYDGLDAVGIDQQPMRNHNQWMLVFFITFM
VMSFFLLDMFIGVMVETFAQCQQQQKKENEEEASHDPSRNKPKKIPTQPPYYTCYSPMRR
SIHTLCTSDFIDVFMATIILISVLIMAFQHYKQPLYIELLTEYSYYAFTVLLIIEVLLKI
LAFGIRRFLRNSWNHLDVAVVLVSVVSIVFIGMEMADWIPINPSILRVCRVLRLAKVLKH
KKIRVLLKTIIKTLSQVGSICLLFAFFFFIYAALGVELFGNLDCTEENPCLGLHRHANFK
HFGMALLTLYQVCTGDNWSAIMKDTLRECRPTDIDCVTYLSHVSPMFFSSFVVMAQFVLV
NLVVAAIMQALEDSNESNPTNFCLPLEEEEDEEEEEEEEEPSDNAGTSLQGSVGVLSNE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgactgacggacagatgagggagaggcgggaggtggcgctcacgatacaagaaaacaga
gtttccactgaggaggagcagctgccctacccgaacctggcctctgtagttttccgcagc
ttaacacagaccacaagaccccgtaactggtgtttgcaaatcgcttgtggcccttggatg
gagtatatgtccatactgatgatcctgctcaactgtgtaagtttgggcatgtacaagccc
ggtgaagggaagagctacaaactagaggtgttcgatgtctttgtctttgcattctttctg
gtggaaatgaccgtcaagatggtggcctttggagtctatggctacagaaacagctacctt
caaaacaaatggaacaagttggacttctttatcaacattgcagaggcatttggatatttt
ttcaatatccttggcatcgactttctactctctcaagtctttggaccgttgcgactgatc
agcagagtaccaagtatgcgggacgtagttacagttctcatagacgtcgtgcccatgctt
gcaattgttctcgtcatcttcttgtttgtcatccacatctttgccgtggccggagtccag
ctgtgggcgggccagctgcgcaaccgctgcttcctgggagacgacattcccacaaataac
agcatgtcccttagcccatacttcgagacccagtttgatgaaaaagttccgtttgtctgt
acgcgggaaggcaagagcgggacgcaacactgccgagatatacccccttaccaagagaat
gggggaacctgctcattggctgccccccacaaagcctcagctgcgaattggggaatccct
acagtggcttcacacacctgtgtaaactggcactctttctacaatgtctgtcgtgctagt
gagaaaaacccccaccggggagtgatcaacttcgacaacatcttctacgcctggataacc
atattccaggttgtcacactagaaggatgggctgagatcatgtttttcataatggatgct
cattccttcttgagttttttattcttcatgctggtcaccgttatgggctccttcatcata
gtcaacgtctgcgcagtcgtcatcgccacccagttcttggacaatatgaaactgaagtca
gaagagccgagtccgggtgccgcgcgtaacactctgcctctgctctgtcgaaggtttgcc
tgttggctgcggaggttcaacagtattatcaccattgcagttgaacatcataatcagcct
cctaagatgacacacgtgttacacatctgtaacatcgttttcacatttgtattttttgtg
gagatgacgttaaaactgatcgcactccgcttcaaatacttttttgatctgaacaacatc
ttcgactttgccattgttattgtcagtgtgtgggagctaattgccgaaacagatggcagg
ttgtcagtgctgcgcgcttttcgtctgctgcggtttgtgaggcttcttcacttcctccca
tacctactgagacagctgctggtgctgaagaggaccatcgccgaggcaggcccgctctgc
atgctgctgttgctcttcactttcgtttgcagtgtactgggtatgcatctgtttggtggt
caattcatattcaaggaccctcaaggagatataatcattgagcgaaaaaactttgacacc
ctgctctggtccatggtcactgtgttccagattctgactcaggaggactggaacctggtg
ctgtacaacgccatgacggctaccacgccatgggctttcctgtactttgtcaccgtcatt
atgttaggaaaacatgtacttctcaatattctcgtgggcatagtggttcagagcttccag
gaaaaggagtcctcagaatgcactcaagactcttctcgcattgacgaggatttcaacgac
tctgtaaccagcttcacctcagagacagacccctcgagacccagccaatctcccttaacc
tctgagaaagacactgaaccagcaaatacccaagaagacaataaacctttgacctgtatc
cagcaaatgctccactggtgcaaggaacatgaagagtgggcattctacgtcttttctcca
cagaacaggttccgaatctattgccaacgtttgatctatcacaagttgtttgacaacacg
gttctcctattcatcctgctaagctgtgtcaccattgctatggagaggcctggaatacac
agtgacagcacggagcgatggatcctgaatatgtcgcgttacgtgttctccggtgtcttc
ctggtagagatgctctttaaggttgtagctctcggtgtgttctttgggaaggacagctac
tgcagctcttcctggaacgtcatggatggtttgctggtgattctgtcggtaattcatatc
atcatctctctggccagttcgggcgaaaacaacatgctgggcattcttaaagttttgcgc
ctgctacggacacttcgcccactgagggtgatcaagcgggcccccaaattgaagctggct
gtggatgctttgatcacttccatcaaacccatcggtaacatagttttcatctgctgcacc
ttcttctttttctacagcatccttggggtacagctgttcaaagggaagttcttccactgc
ttgggtcaatacacaaagaacatcaccaacaagtctgactgtctcttagccaactatctc
tgggtgcaaaagcggtacaactttgacagcctgcctcaggctctgatgtccctttttgtg
atgtactcaaaggacggatgggtgaacctaatgtatgatggactggatgctgtgggaata
gaccaacagcccatgagaaaccataaccagtggatgcttgtttttttcatcacgttcatg
gttatgagcttcttcctcctcgatatgtttatcggtgtaatggtggagaccttcgcccag
tgtcagcagcagcaaaaaaaagaaaatgaagaggaagcatcacatgacccgagcaggaac
aagcctaagaagatacctacgcagcctccatattacacatgctactccccgatgcgtcgc
tccatacacactctgtgtaccagcgacttcattgacgtcttcatggccaccatcattttg
atcagtgtcctcatcatggccttccaacattacaaacagcctctgtatatagaattgctc
acagagtattcgtactatgccttcactgtcctcctgatcattgaagtcctcttgaagatt
ctggcgtttggcatacggaggttcctccgaaacagttggaatcatctggacgtggcggtt
gtcttggtttccgtcgtcagcattgttttcattgggatggaaatggccgactggattccc
attaatcccagcatcctgagagtctgtagagttctcaggctagcaaaagtgctgaagcac
aagaaaataagagtcctcctgaaaacaattatcaagacgctgtcacaggttgggagcatt
tgtcttctgttcgctttttttttctttatatacgctgcgctgggagtggagctcttcggc
aacctagattgtaccgaagagaatccctgccttggcttacatcggcatgctaactttaag
cattttggcatggccctgctcacgctgtaccaagtgtgcaccggagacaactggagcgca
ataatgaaggacactttgagggagtgtcgtcccaccgacatcgattgtgtgacctacctc
tcccacgtctcccccatgttcttctcctccttcgtggtcatggcccagtttgtactggtc
aacctggtggtggcagccataatgcaggctctggaggacagcaacgagagcaacccaact
aatttctgtctccccctggaggaggaggaggacgaggaggaggaggaggaggaggaggag
ccgtcggacaatgcaggcacgagtctccagggcagtgttggtgttttaagtaatgagtga
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