Notothenia coriiceps (black rockcod): 104960478
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Entry
104960478 CDS
T04920
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D-like
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04020
Calcium signaling pathway
ncc04080
Neuroactive ligand-receptor interaction
ncc04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
104960478
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
104960478
04082 Neuroactive ligand signaling
104960478
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104960478
Ion channels [BR:
ncc04040
]
Ligand-gated channels
Glutamate (ionotropic)
104960478
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
104960478
NCBI-ProteinID:
XP_010786847
UniProt:
A0A6I9PF66
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MAFSIQPPPLPFRYTSAPALSFSPYFSLPLSLSTSPLSPPYLTSVCVSPLVPVPSLASCC
PPGALAVLLSGGGRAGLQSRLGRRSGRGLAHVVRRGAGSLRFEHGEPATGCVCRAAPGLE
GRTPPEDRSRSLCADSRSCGHAQGLRNNGYFGNITLGGRDYSFNVDGYLANPFLDVISWT
PGRGWEDVGWWENGVLRLRYPAWSRYGPFLKPPDDAQHLRVVTLEERPFVIVELADAASG
TCIRDSVPCRRPLNASVIHEGVAPMKQCCKGFCIDILKRLAKIVGFTYDLYLVTNGKHGK
KIDGVWNGMIGEVVYKRADMAIGSLTINEERSEVVDFSVPFVETGISVMVSRSNGTVSPS
AFLEPYSPAVWVMMFVMCLTVVAVTVFIFEFFSPVGYNRSLANGKKAGGSTFTIGKSVWL
LWAIVFNNSVPVENPRGTTSKIMVLIWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSD
KKFQHPEEQYPPLKFGTVPNGSTEKNIRSNYPDMHQYMGKYNQRGVEDAITNLKTGKLDA
FIYDAAVLNYMARKDEGCKVMTIGSGKVFATTGYGIALHKNSRWKRPLDLALLQLVGDDE
IEMLERLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKLRH
CMATSSGKLDFLLAISRGMYSCCSFEDETTPGGSKTLPTHHHTAMVTVPSKPHVVSTSKT
NPVIAMAQQQQPPQQQQPQPVYKTPLPGSPPTVVHSGTALGPSNAPIAGAPLPCSTFLPR
SDRRLAVVDRWRLPKTAAATNPLAVRGAITDMGPFAQKVPPNWASAAGGGGGLDGYKRYY
GPIDPEGLGPCMEQQAGSQTPKTMPRGHPQPPPASVAFYSEKGVDHGVGKKVVGGGSGGQ
GKGAVKPLGTPRLPSKSQAPLPPTPPLPHPSPPLPSSFWRKRRPKKPKEPGGPLYENILP
LGRRGGARDGVREGGGRRARPLSPPLSLPVPVPLSPSYTPPSPSASLHYTSSSSSSTTSS
TSTSSSASSSRSTSPTYSYSSSRSTRDRTGGIDGEDDDDDEELTEESSLLLGRGRERERS
IIRPRSFSQGRLPPPIPPRKPRTSWGDRERERERERGGSQLSQLQEWWASWSERERGGAG
GDAERLKREKKRRKEKEKEKKKKKKNKKRKKREERERERERERKRRKVKKKKKKELKTKK
RKKSIGGRRSEPEEGDGEAEREGEAEGEMEGGIQDYSFSAQYRSTFGEKGRDSWEGDRVE
RGRREGGDEGNEQEDSNRSRERRPKSSHSHSRPRIPSKRYPNLNKLPASVKFWVNGRGDD
SNTPPTSLHPLLPSSKRRKSGGVERDDSGRLGERRPLLMHYEKEKAQTREGPSFPEWDSE
DEEDDEDDDEDDEEEEERERQRERGRRVGRGAVSESERDRARAEDSYSDEGSSGEFGRFE
RYWEGGAGGGSAGIGGIGGGGWFFGTYPSREKGGSINSRDDSLLGTRAEGWIGADFLGSG
PGVGWGSGGGSGGLSSQWPPPPAAFPPPRRYWSMDKIPVKGEKKWKSRGGKSKGRSRDRG
GEAGRATMCSCSLYPQPHPYPHPHSHSHASHSKRGATALSHSQEELLPHCHSFSGGSRPK
PLPPKPDSSQAKSGSQSNLSLSTQPMDHPPQPSPSPPQQPSMSPTSLPVPIPPPPSSSSV
PPPAGVGMVGQAQASASAKLQYQRLRSVPQPRRFYSPHLPLKAKSLCSRRGSAHFSSLES
EV
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggccttttctatccaacctcctcctctcccgttcaggtacacctctgctccagctcta
tctttctccccttacttctccctccctctgtctctttccacgtctcccctgtcccctcct
tatctcactagcgtgtgtgtgtctcccctcgtccctgttccctccctggcttcctgctgt
cctccaggtgcgcttgctgtactgctctcaggaggaggcagagctggtcttcaaagccgc
ctgggccgccggtcaggccggggcctcgcacatgtggttcgccgtggggccggctctctc
aggtttgagcatggagagcctgccacgggctgtgtttgccgtgcggccccagggctggag
ggacgaaccccgccggaggatcgctcgcggagtctctgtgctgactcacggagctgtggc
catgcgcaaggattacggaacaacgggtatttcggcaacataacgcttggtggtcgtgac
tattccttcaatgtggacggttacctggccaacccattcctcgatgtcatttcctggaca
cctggacgtggatgggaagatgtaggctggtgggagaatggagtgctgaggctccggtac
ccagcatggtcccgctacgggccattccttaaaccacctgacgatgcccagcacctgcgc
gttgtcacactggaggaacggccatttgtcattgtggagctggcagacgctgcatccggg
acctgcatccgtgactcggtgccctgcagacgaccccttaacgccagtgtcatccatgag
ggcgtggctcccatgaagcagtgctgcaaaggcttctgcattgacatcctcaagagattg
gccaagattgtcggcttcacctatgacctttacttagtgaccaatgggaaacatgggaag
aaaattgatggggtttggaacggaatgattggagaggtggtgtacaagcgagccgacatg
gccattggctcgctgactatcaatgaggagaggtcggaggtcgtggatttttccgtcccc
tttgttgagacggggatcagtgtcatggtctcccgtagcaacggaactgtatcaccatcc
gctttcttagagccctacagtcccgcggtgtgggtgatgatgttcgtcatgtgcctgacc
gtagtagctgtgaccgtcttcatatttgagttcttcagccctgtgggctacaatcgcagt
ctcgcgaacggcaagaaggctggaggctctactttcactatagggaagtcggtatggctt
ttgtgggctattgtcttcaacaactctgtgccagtggagaaccccagaggaaccaccagt
aagatcatggtgctgatctgggccttcttcgctgtcatctttctggcctcctacactgct
aacctggcagccttcatgatccaggaggagtacattgacacagtgtcagggctctcggac
aaaaagtttcagcatcccgaggagcagtacccacctctgaagtttggcacggtgcccaac
gggagcacggaaaaaaacatccgctccaactacccagacatgcaccagtacatgggcaaa
tacaaccagagaggagtggaggacgccataacgaacctaaagactgggaaactagatgct
tttatttatgatgctgcagtattgaactatatggccaggaaggacgaaggttgtaaggtg
atgaccataggctcggggaaggtttttgccaccacaggctacggtatcgccctgcacaaa
aactcacgctggaaacgtcctcttgacctggccctgctgcagctggtgggagatgatgag
attgaaatgctggagcgcctttggctgtctgggatctgccataatgacaaaattgaggtg
atgagcagtaaactggatattgacaacatggctggtgttttctacatgctgctggtggcc
atgggcctcagtctgctggtgtttgcctgggaacacttggtctactggaagctgcgccac
tgcatggccaccagttctggcaaattggactttctcctggcaatcagcagaggcatgtat
agctgctgtagttttgaagatgaaacaacgccaggtggaagtaaaactttgccaactcat
caccacactgccatggttacagttccgtccaagccgcatgttgtctcaacgtctaagacc
aacccagtcattgccatggcgcaacagcagcaaccaccgcaacagcagcaaccacagccc
gtctacaagacacctctaccgggctctcctcccaccgtggtgcattctgggactgcactg
ggtccctcaaatgcccccatagctggtgcacccctcccttgttccaccttcctgccccgg
tcagaccgcagactggccgtggtggatcgctggaggctgccaaaaaccgctgcagccaca
aacccattggctgtaaggggggcaatcactgacatgggaccctttgcacagaaagtccca
ccaaactgggcttcagctgctggagggggtgggggacttgatggctataagagatactat
ggtcccattgaccctgagggactggggccctgcatggagcagcaggcaggttcccagacc
cccaagactatgcccaggggccacccccagccccctccagccagtgtggccttctattca
gagaagggcgtagatcatggggtggggaagaaggtggtgggaggtggcagcggaggtcag
gggaagggggccgttaaacctctgggcactcccagattgccttctaagagtcaggcccct
ctgccccctacacccccgctgccacacccctctccccctctcccctcatccttctggagg
aagcgcaggcccaagaaacccaaagagcctggagggcctctgtatgaaaacattttgcca
ctggggcggaggggaggagcacgagatggagtgagagagggaggagggaggagggcacgc
cccctctctcccccgctctcacttcctgtgccagtacccctcagcccctcttacacccct
ccttcgccctctgcatctttgcactatacgtcctcctcgtcttcgtcgaccacctcgtcc
acatccacgtcctcatctgcttcatcttcccgctcgacctctcccacctactcttacagc
tcctccaggagcacacgggacaggactggaggaatagatggagaggatgacgatgacgat
gaagagctgaccgaagagtcgagcctcctccttggcagggggagggagagggaacgctca
atcatccggcctcgttccttcagccaagggcgcctgccaccgcccattccccccaggaaa
ccccgcacatcctggggtgacagagaacgggaacgagagagggagcgggggggaagccaa
ctgtctcagctccaagagtggtgggcaagctggagtgagagagaaaggggtggagcaggt
ggagatgctgaaaggctaaaaagggagaagaagaggaggaaagagaaggagaaagagaag
aagaagaagaaaaagaacaaaaagaggaaaaagagggaagagagggaaagggagcgagag
agagaaaggaagcggcgaaaagttaaaaagaagaagaagaaggagctaaagacaaagaaa
aggaagaaatcaattggggggagacgctccgagccagaggagggagatggagaggcagag
agggaaggggaggcagaaggagagatggaagggggaatacaagactactcgttctctgct
cagtatcggagcacatttggggagaagggacgggattcttgggaaggagaccgggtagag
agagggaggagggagggaggagatgagggcaatgaacaggaggacagtaacaggagcagg
gagaggcgtcccaaatcctcacactctcattccagacctcgtattcccagtaagcgctac
ccgaacctaaacaaactgcctgcatccgtaaagttttgggtgaatggaagaggagatgat
tctaacactcctccaacctccctccacccactgttgccctcctccaagaggagaaaaagt
ggaggggtggagagagatgacagcgggaggttaggagagcggcgtcctttgttaatgcat
tatgaaaaagagaaggcacagacgagagaagggccgtccttccctgagtgggactctgag
gatgaggaggatgatgaggatgatgatgaggatgatgaggaagaggaggagagggagaga
cagagggagaggggaaggagagtaggtaggggggcagtgtctgagtcagagagggacagg
gcccgggcagaggacagttattcagatgagggctcgtcaggggagtttggccgctttgaa
agatactgggaaggaggtgcagggggaggcagcgctggaatagggggcataggcggggga
ggctggttttttggcacttacccctccagagagaaaggggggagtataaacagtcgggat
gattcgttactaggaactcgggcagaagggtggattggtgctgatttcttgggttcaggg
ccaggagtaggttggggctcagggggagggagtggaggactcagctcccagtggccaccc
ccccctgctgccttccctccaccgaggaggtactggtccatggacaagatccctgtgaag
ggagagaaaaagtggaagagtagaggagggaagagcaaggggcgatctcgagacagaggg
ggagaagcaggacgagccaccatgtgttcctgcagcctttacccacagccccatccttac
ccccatccccacagccactcgcacgcctcccactccaagagaggagccacagcgctttca
cacagccaggaagagcttctcccccattgccacagcttcagcgggggttctcgccccaag
cctctccccccaaaaccagattccagtcaggccaaatcaggcagccaatctaacctcagc
ctcagcacacagcccatggaccatccccctcagccctcaccctcgccaccccagcagccg
tccatgtctcccacttctctcccggtccccatcccgcctccaccctcttcatcctccgtc
ccacccccagcaggggtcgggatggtgggccaggctcaggcttcggccagtgccaagctc
cagtatcagagacttcgctcggtgccacagccacggaggttctactccccacacctgccg
ctcaaagccaagagcctttgctctcgccgagggtcggcccacttctccagcctggagagc
gaggtatga
DBGET
integrated database retrieval system
