Notothenia coriiceps (black rockcod): 104960491
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Entry
104960491 CDS
T04920
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104960491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104960491
Membrane trafficking [BR:
ncc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104960491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
104960491
NCBI-ProteinID:
XP_010786864
UniProt:
A0A6I9P8C0
LinkDB
All DBs
Position
Unknown
AA seq
841 aa
AA seq
DB search
MAFRAFKQTHVFEKQSAPKEKDKSSIQCIACCDPHVYIGTKDATVQHLILSSSTDLGSGQ
SKTREGRARKLGSSNQVTQLRVVPLYNHLLVLWDRSITALNMFSLEPVPGLKKIQHVSLF
EVCDSMPSAQAQCVEMVTSSSRRKLIRIHVVGVDRWDVVKEVPLLYDPRALAVDGTSVCV
ATSDRYLLCDIQTGSSQELFPHNHSRQCVFVTSVGRGEFLLNGPESLGMFVMKTGICQRP
PLQWPQEVLAAGVCFPYILTVQPQVLSVYSMVDQQRKQTVSLTGAKGLLSTSDGVLVFTE
RDIFSLRLVPIEEQIQALVRHERIEEALLLLDGVQGHCPLDSYKELLKAITCLAGFVHFY
QEGFSEAKYLFITGELDPREIIHLYPDMQSCLSEDFQSQLDQPNKGRDLQVLWQGDRSTF
HHYLAFLGDFLRAVKGTELGLRCSKEVDCALLRLYVELGDSENLQQLVALANECRLDHCV
PVLEQHNRLFALGSLYQSHGNVIDAIKTWVKIADGFHKDPSCSDVYGHIVRTLSQLQDKE
VVWTFSDWTLQRNQEIGVQIFIKRPPDDRFETQDVLALLEKYPLAMLLYLEFLIYDLNSE
ESRHHNHLALTYVTEMLQEEEEVDLRKTRGKLQQLLWESKFYDVSTVYERVKSANLHMEE
AILLGRAGEHSQALKVLVHQEGDFQAAEAFCCRAAQGRDPQGRDPQLRQTLLLTLLQIYL
SSEELTSAAVDLLNHNPLVFAAEQIIQLLPDSWSVQLVSQFLVGSLRKTFHQRRMSMVQK
ALGQAELMRHKVIWMQASKTTFRLDKGQKCKVCQRDLAEPQFVCDLHGDLMHTNCTDFTS
S
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagagcatttaaacaaacacacgtttttgaaaagcaatcagctccaaaagaa
aaggacaaatccagcatccagtgcattgcgtgctgcgacccacatgtgtatatagggacc
aaagatgcaacagtccagcatctcatcctttcaagtagcacagacctgggatctggccag
agcaaaactagagaaggtagggcaagaaaactgggctcaagcaaccaagtaacccaactg
agggtagtcccactttacaaccatctgctggtcctgtgggaccggagcattactgccctc
aacatgttctccttagagcccgttcctggcctgaagaagatccagcatgtgtctttgttt
gaggtatgcgactcgatgccgtcagcccaggcacaatgtgtggagatggtgacttcctcc
agccgcaggaagctgatccggatccacgtggtgggagtggacaggtgggacgtcgtaaag
gaagtcccactgctctacgaccctagggccttggcagtggatggcaccagtgtgtgtgta
gctaccagcgacaggtaccttctctgtgatatccagactgggagcagccaggaacttttc
cctcacaatcacagcaggcagtgtgtctttgttacctcagtgggacgaggggaattcctc
ttgaacgggcctgaatctttgggcatgtttgtgatgaagacggggatatgccagcgcccc
cccctgcagtggcctcaggaggtcttggcagccggagtgtgtttcccctacatcctgacc
gtacagccccaagtgctgtcggtctacagcatggtggaccagcagcgaaaacagactgtg
agtctcactggagcaaagggactactttccacatcagatggtgttctagtgttcacagag
agagacattttcagcctgcgcctggtgccaatcgaagagcagatccaggcacttgttagg
catgaaaggatcgaggaggccttactgctgctggatggagttcaagggcattgtccactt
gactcatacaaggagctgctgaaggccatcacttgcctggctgggtttgttcatttttac
caggagggtttttccgaggccaaatatctattcattacaggtgagcttgaccccagagaa
atcatccacctctaccccgacatgcagtcgtgtctcagcgaagactttcaatcccagctc
gatcagccgaacaagggcagagatctccaggtgctctggcagggagacaggagcacattt
catcattacctagccttcctgggagatttcctcagagcagtaaaggggactgagctaggc
ctgaggtgcagtaaggaggtggactgcgccctcctgaggctgtacgtagaactgggagac
tctgaaaacctgcagcagcttgtggcattagccaatgagtgcaggctggaccactgtgtt
cctgtattggagcagcacaacagattatttgcattaggttccctctatcaaagccatgga
aatgtaattgatgcaattaagacttgggtgaaaattgcagatggcttccacaaagacccc
tcttgctcagatgtatacggacacatagttcggactctcagtcaactgcaggacaaagag
gttgtgtggacattttcagactggactcttcaaagaaaccaggagataggggtgcagatc
ttcatcaagcgtccaccagatgaccgattcgagacacaagacgtccttgctctcttggag
aaatacccgctggcgatgcttttgtaccttgagtttttaatctacgatttaaacagtgag
gagagtagacatcacaaccatctggccctgacatatgttactgagatgctacaagaggaa
gaggaagtagatttgaggaagaccagagggaagttgcagcagctgctctgggaatccaaa
ttctatgacgtctccactgtatatgagagagttaagtcagcaaacttgcatatggaggaa
gccattcttctgggtagggctggtgaacactcccaggctctgaaggtgcttgttcaccag
gaaggagacttccaggctgcagaggccttctgctgccgggccgcccagggccgagacccc
cagggccgggacccccagctcagacagaccctgctgctcaccctgctccaaatctacctg
agctcagaagagctcaccagcgctgccgtggatctgctgaaccacaaccctctggtcttt
gcagcagagcagatcatccagctgctgcctgactcctggtctgttcaactggtctctcag
ttcttagtgggatccctcagaaagactttccaccagaggcggatgtcgatggtgcaaaag
gctttgggccaagcagagctcatgcggcacaaggtcatatggatgcaggcctcaaaaaca
acattcagattagacaagggacagaagtgtaaggtttgtcagagagacctcgcagagcca
cagtttgtctgtgacctccatggtgacctgatgcatacaaactgcactgacttcacatca
tcttaa
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