Notothenia coriiceps (black rockcod): 104961199
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Entry
104961199 CDS
T04920
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104961199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncc03009
]
104961199
Ribosome biogenesis [BR:
ncc03009
]
Eukaryotic type
Pre-60S particles
RNases
104961199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
THOC7
Zwint
CdaS_N
Motif
Other DBs
NCBI-GeneID:
104961199
NCBI-ProteinID:
XP_010787747
UniProt:
A0A6I9PHQ7
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MFPSSGLFADINCPFSKRGLCERPHCLYKHATELRDKFGAKSANYKSSIVDFAGVQNGYA
VNDETKDDCLQELERINKEIETVRHEVEQEQKRLSRYQTVQADSKNTATLSTPETGGKLK
GKGTCGRSSYTTFTKTYSRERKYVVDNSKPRTDLEYDPLSNFSAGIRSYSSAGKEQQGKS
GQGLKRARSAVPCDQNKPVLCQPEPSCSPSPEPLDDCNEDSVLIIDIPPSPDKKRVRAQQ
SGDSVAGKYLKEEADKLEVKKTHILLLNTEACKVTSQPASKIKGNRLSSNCVAENTKSRI
NVYENKECENIPVDGSVVQLTGFSEDLRCETQEMTHFQAAEEVFEKITGPASPANLYQQV
NDWNNLVFEKEENPFQFEFPQCELPNFADKMILLQSHNFPPNNSFFYNAPDANSGSLCTQ
ETKQAQAAAAEQPVQNRLSYQPGQMQGQAAASENYLEPAEPTSDHGNGQAWYESSASNMI
TGAESASPSNEGAILISSGSDDERNYSDMELSDSDPMEECYRIFMEANENNGNEEQPDVS
VGAMEEEKTKLDVKQQALPGKKRLAHEAKRIEQPASKSRPQPQVLVPLRGPAVSGFASQP
SITPEIQQVQQRASMLTASVKGVQSLVHSNSQRRLETQVAPLHSIQTPESLQPVPVQNTY
MNYISLGTAVIGVGNNLHLILPEGTFPLPVTSSSSQVTSVLTPISHLPTSYGAVRPMYHL
PAVTPMQRYRTTAPVLIPAPARKPSLTSAFAATLSSPAASTTSQTAVHAGLKLVPTKRKM
KQQCETVKVPHDTRQRYVNLFTEEFLKTTANVNDAFEKALAEEKAVYNRSMNKLKYMSVA
VNALKKLKNQVAVADKDENEVNSQKSKGNIPLNLKFKGNDDTALYESLKEYVLSEETLVE
SNFPVQHPEKHGCAVLFADNKKGHADPLKRICCRCGATYSVSQTGKHIRKEECNYHYGKG
VTKKVPGGVETRYSCCEGVMGAPGCQVFKLHVHDFISMDGFVSTVPRCPSDTSCPGVYSL
DCEMCYTIHGLELSRVTVVNCNLQVVYDAFVRPDYEVIDYNTRFSGISEEDLKGNHTSLR
EVQETLLSFISTDTILIGHGLETDHYALKLLHGMVVDTSVVFPHRLGPPHKLTLNKLTAD
YLRRIIQESVCGHDTADDAAACMELMLWRVKEDGKFKK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtctggtctttttgctgatataaactgtccattctcaaaacgtgggctt
tgtgagcgacctcactgtttgtacaaacatgccacggaactgcgggataaatttggtgcc
aagtctgccaactataaatcatcgatagttgattttgcaggagttcaaaatggctatgca
gtgaatgatgagaccaaagatgactgcctccaagagctggagaggatcaacaaggagatt
gaaactgtaaggcatgaggtagagcaggagcaaaagcgactgtcacgctaccagaccgta
caggcagacagcaaaaacactgctactctttccacgcctgagactggaggtaaacttaaa
ggtaaaggtacctgtgggcggtcttcatacacaacctttacaaaaacgtactcccgagaa
cggaagtacgtagttgacaattcaaaaccaaggactgatttggagtatgaccctctgtcc
aacttttctgctggcatacggtcctacagctcagcaggtaaagagcaacaaggaaaaagt
ggacaaggtttgaaaagggcaagaagtgctgttccttgtgaccaaaataaaccagtttta
tgtcagccagagccttcctgctcaccttctccagagccccttgatgactgtaatgaagac
agcgtcctgattatcgatattcctccctcgcctgacaaaaaaagagtgagagctcaacaa
tctggtgattctgttgctggcaaatacctcaaggaagaagcagacaaattggaggttaaa
aaaacacatattttacttctaaacactgaggcgtgcaaagtaacatctcaacccgcatca
aagataaaaggaaatagactttctagtaactgcgtagctgaaaacacgaaaagtcgtatt
aatgtttatgagaacaaagaatgtgaaaatataccagttgatgggagtgtggttcagtta
actggcttttcagaagacctgcgatgtgaaactcaggaaatgactcactttcaggctgca
gaagaagtatttgagaaaattactggacctgcaagtcctgccaacttataccagcaagtt
aacgactggaacaatctggtgtttgaaaaggaagaaaacccatttcagtttgaatttcct
cagtgtgagctccccaattttgctgataaaatgattctactgcagtcgcataattttcca
ccaaataattcatttttttataacgctccagatgctaattcaggctctctgtgtacgcaa
gaaaccaagcaagcccaggcagcagcagcagagcagcctgttcagaacaggcttagttat
cagccaggacagatgcagggtcaagctgctgcatctgaaaactacctggagccagcagag
cccacttcagaccatggcaacggtcaagcttggtatgagtcatcagcatcaaatatgatc
actggagctgaatcggcatccccatccaatgagggggcaatactcattagttctggctct
gacgatgaacggaactattcggatatggagctgtcggacagtgacccaatggaggaatgt
tacaggatcttcatggaggccaacgagaataatggaaatgaggagcagcccgatgtatct
gttggagctatggaagaagagaagacgaagttagatgtcaaacaacaagcattgccagga
aagaagaggctggctcatgaagccaaacgtatagagcagccagcgagtaagagcagacct
caaccccaggtgctggttcccctgcgtgggcctgcggtgtcaggatttgcctcacagccc
tccatcacccctgagatccagcaggtacagcagagagcctccatgctgacggcttcagtt
aaaggtgttcagtctctggttcactccaactctcagaggaggctagagacccaggttgca
cctttgcattcaattcaaacacctgaaagcctgcagcctgttcctgtgcaaaatacttac
atgaactacatatctttgggaacggctgtgatcggagtgggcaacaacttgcacttgatc
ctcccagaaggcacctttcctctgcctgtcacttccagttccagccaagttacttcagtg
ctaaccccaatcagtcatttgcctacaagctatggcgctgtaagaccaatgtaccatcta
cctgcagtaacccccatgcaaagataccgcacaacagcacctgtgctcatccctgcgccg
gcacgtaaaccttcactgacctctgcctttgcagcaacactttcaagtccagccgcttcc
actacctctcaaactgctgtccatgctggccttaagctggtgcctactaaacgtaagatg
aagcagcagtgcgagacggtcaaagttccccatgacacccgacaacgttatgtcaacttg
ttcacagaggagttcctcaagacaacagccaatgttaatgatgcctttgaaaaggcactt
gctgaagagaaggctgtgtataatcgcagtatgaacaaactcaaatatatgagtgttgct
gtaaatgcactgaagaagctgaagaaccaagttgccgttgctgataaagatgaaaatgaa
gttaacagccaaaaatccaaaggcaacattccccttaatctgaagtttaaaggaaatgat
gatacggcattgtatgagagtttgaaggaatatgttttgtctgaggaaacgctggttgag
agcaactttcctgtccagcacccagagaaacatggctgtgctgttctttttgctgacaac
aagaaaggccacgcagaccccctcaagaggatctgctgccgatgtggtgctacatactct
gtgagccaaacgggcaagcacattcgcaaggaggagtgcaactaccactatgggaaagga
gttacaaagaaagtgccaggtggagttgagacgcgctacagctgttgtgagggagtcatg
ggagcacctggatgtcaggtgtttaagctgcatgtccatgacttcatcagcatggatggg
tttgtgtcgaccgtccccagatgtccctcagatacgagctgtcctggggtctactccttg
gattgtgaaatgtgttataccattcatggcctggagctgtccagagtgactgtagtcaac
tgtaatctgcaagttgtctatgatgccttcgtcagacctgattatgaagtcattgactat
aacaccaggttttcaggcatcagtgaagaagatcttaaagggaaccacacctccctcaga
gaggtgcaggagaccttattgagcttcatcagcacagacaccattcttattggacacggc
ctggaaacagaccactatgccttgaagttgctccatgggatggtggtagacacatcagtg
gtcttcccacatcgtctgggcccccctcacaagctgaccctcaacaaactcaccgctgat
tacctcaggagaatcatccaagagagtgtttgtggccatgacactgcagatgatgctgct
gcctgcatggagcttatgttatggagggtcaaagaagatggaaaattcaaaaaatga
DBGET
integrated database retrieval system
