Notothenia coriiceps (black rockcod): 104961880
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Entry
104961880 CDS
T04920
Symbol
zbed1
Name
(RefSeq) zinc finger BED domain-containing protein 1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104961880 (zbed1)
04121 Ubiquitin system [BR:
ncc04121
]
104961880 (zbed1)
Transcription factors [BR:
ncc03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
104961880 (zbed1)
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
104961880 (zbed1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
DUF659
Motif
Other DBs
NCBI-GeneID:
104961880
NCBI-ProteinID:
XP_010788539
UniProt:
A0A6I9PCK2
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MEGKSSGPSCSGLNLVAHPRAKSKVWKYFGFDTDADGCILHWKRIYCRVCMSQIAYSGNT
SNLSYHLEKNHPVEFSEFVKSNTDQMREAFATAFSRIKTEPTGTHVQQPSQDTNLRQNLN
YENRRHNDLTIAVINFICEGLYPVSVVEEPTFKTLMSTVDPGYSPPSKSDLALKMLPQMY
CRTRDMVFNELAGVLNCGVTTDLWQSQTQNRTYISLSMHSVNHNNATGFSMTNKCLKTFE
VQDDNTAENITRAMYETFVEWGITHKVIGANTNGSVDIVKACSLLELSVEMPCLGHTVNR
ALDEALQLPRVDSFLGSCRKLVDHFREPTIYLLRERQKQHGLAQCPLITDRGRSWLATLA
MLQRLKEQQVAVTATLIEGSSSHHFSFDGPDWTFLEGLIEVLQPFKVVANMFTSCRYPTI
SMVRPVLHMLLNTTLKVNEGDLKEIGMAKEVIAKVLSSTYSQNTQLSQEISTFLNIATFL
DPRYKKLPFLSTQERSKVESNIVEEAKAILEKQIGERPPCVEDFSVVSDEPPSKRPHRES
AGSATQENPLAAIFCQSDADQSQEELHAQVVEELSNYKSQRVLGLNEDPLLWWSSHALLF
PTLPKVLQKYWCVPATSVPCHRLLSSSGTVLCGKRNRIAPALVDHQVFLYENSRSYYEPE
PCEDDLDNVWEGNCSLGPPVE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggagggtaaaagctcaggaccttcatgctctggcctcaatctggtagcacacccacgg
gcaaaaagcaaagtctggaaatactttggcttcgacacagatgcagatggctgcattctg
cactggaaacgaatatactgtcgagtatgtatgagtcaaatagcttactctggaaacacg
tccaatctttcgtaccaccttgagaagaaccaccctgtggagttcagtgagtttgtgaag
agcaacacggatcagatgcgcgaggcgtttgccacagcattctccaggataaagaccgag
cctacaggaacacacgttcagcaaccatcccaggacaccaacctaaggcagaacctaaac
tatgaaaacagacgacataatgatctgacaatagctgtcatcaacttcatctgcgagggg
ttgtaccctgtgtctgtagtggaagagcctactttcaagaccttgatgagcaccgtcgat
cctggatactctccaccgagcaagagcgatctggcactgaagatgcttcctcagatgtac
tgccgaacccgggacatggtgtttaatgagcttgctggggttctgaattgtggggtcact
acagacctctggcaaagccaaacccagaacaggacatacatttccctctcaatgcattca
gttaatcacaacaatgcaactggtttctccatgaccaacaagtgccttaaaacgtttgaa
gtgcaggacgacaacacagctgagaacatcaccagagcgatgtatgaaacttttgttgaa
tgggggataactcataaagtcattggggccaacacaaatggttctgtggacatagtgaaa
gcatgctctctcctggagctgtcagtagaaatgccttgccttggacacaccgtcaatcgc
gccctggatgaagcgctccagctgccgcgagtcgacagctttttgggaagttgccgcaaa
cttgttgatcactttagagaaccgacaatctacctgctgagggagaggcagaagcagcat
ggcctcgctcaatgcccactcatcacagacaggggcaggtcttggttggccacgttggcg
atgctacaaagactgaaggagcaacaggtggctgtaactgcaacactgatcgagggctcc
agcagccatcatttcagcttcgatggccctgactggacctttttagagggcttgattgaa
gtgctccagccttttaaagtagtggcaaatatgttcacttcctgcaggtacccaaccatt
agcatggtcaggccggtgcttcatatgttgttgaacaccacccttaaggtcaacgaaggg
gacctcaaagagatcggcatggccaaagaagtcatagcaaaggtcctatcaagcacttat
tcacagaacacacagctgtcacaagaaatctcaacgttcctgaacatcgctacgttcctg
gatccccggtacaaaaagcttcctttcctgtccacacaggagcgctccaaggtggagagt
aacatcgtagaggaggcgaaagcaatcctcgagaagcagattggagagcggccaccatgc
gttgaagatttctccgtggtgtctgacgagccaccgagcaaaaggcctcacagagagtcc
gccggcagcgcaacccaagagaaccctttggccgccatattctgtcagtccgatgcagac
cagagccaggaggagctgcacgcacaggtggtggaggagctgagcaactacaaatcacag
agagtcctgggtctgaatgaagaccctctgctgtggtggtccagccatgctctcttgttc
cccaccctccccaaggtgctgcagaagtactggtgtgttcccgccaccagtgtgccatgc
caccggctgctgagctcctctgggactgttctgtgtgggaagaggaaccgcatagctcca
gctttagtggatcaccaggtcttcctgtacgagaactcacggagctactatgagcctgaa
ccctgtgaggatgacttggacaatgtttgggaaggaaactgtagtctcggtccgccggtg
gaatga
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