Notothenia coriiceps (black rockcod): 104963127
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Entry
104963127 CDS
T04920
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104963127 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104963127 (hbs1l)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104963127 (hbs1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
Aq_aa27
Motif
Other DBs
NCBI-GeneID:
104963127
NCBI-ProteinID:
XP_010789990
UniProt:
A0A6I9PQN1
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDVYGQSVDDDYCISPATANQFIYSRQERQAPREQPLEEEEY
EDDVPMSPTVSLNLDPLDQAKLFSCLDHMRTVLGDAVQDSVLTQAAISCGFDPQKALDAV
LSEDAKTAPVTKSTNEETALAAIASQEKAPLSQRIKKEAVAEKAKSRDVSHNKLDSEVVP
KVARMTVSGKKQTMGFDVPSVNGVVRTPERPTAASASEATPRRPETPSKGSNGDELSTVP
TPGRSGKARQTINIKEELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMH
KYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIP
NMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNW
QQQRFQDITSKLGHFLKQAGFKDSDVYYIPSSGLSGENLTTRSSVPELTSWYSGPSLMQQ
IDAFKAPLRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILAMPPNETCTVKG
ITLHDEPLDWAAAGDHVSLTVTGMDIIKINVGYVFCDPKEPVRVCTRFRARILLFNIEVP
ITKGFPVLLHYQTVSEPATIRKLISVLHKSSGDVIKKKPKCLSKGMNAIVEIQTQRPVAL
ELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgttcgaggttataactacgatgaagacttagacgatgatgac
gtgtatggacagtctgtggatgatgactactgtatatcaccagcaacagcaaatcagttc
atctactcacgtcaggagaggcaagcaccaagggagcagccgttagaagaggaagaatat
gaagatgacgtacccatgtcccctaccgtcagcctcaacctagaccctcttgatcaagcc
aaactgttttcctgtctggaccatatgcggactgtgttgggagatgcagtgcaagactca
gtcctgacccaggcagccataagctgtggatttgacccacagaaggccttggatgcagtc
ctctctgaagatgctaagacagccccggttaccaaaagcaccaatgaggagacagcttta
gccgcaatagcaagccaagagaaagcgccgctttcacaaagaatcaagaaagaggccgtc
gctgagaaagctaaaagcagagacgtgtcccacaataaactggactctgaagtcgtcccc
aaagtggcccgcatgaccgtctcaggaaagaagcagaccatgggcttcgatgttcccagt
gtgaacggtgttgtcaggacccccgaacgccccacagcagcctcggcctccgaggccacg
cccaggcgtccagagactccatctaaaggctcaaatggagacgagctctccacagttccc
accccggggcgctctggaaaggcccggcagacgatcaacatcaaggaagaactggagaag
aggcagggcggcaaacctctgttaaatttggtggttataggtcacgtggatgcaggtaaa
agcactctgatgggccacctgctttatctgctgggcaacgtcaacaagcgcaccatgcac
aagtatgagcaggagtccaagaaggcgggaaaggcttcctttgcttatgcttgggtcctg
gatgaaactggcgaggagagggacagaggtgtgacgatggacgtgggcatgaccaagttt
gagacggactcaaaggtggtgactctaatggatgcgcccggacacaaagacttcatcccc
aacatgatcacaggagctgcacaggccgacgtggctgtgctcgtggtggacgccagccgg
ggggagttcgaggcgggcttcgaggcaggggggcagaccagagaacatgccctgttggtg
cgctcgctcggcgtcactcagctcgctgtcgctgtcaacaagatggaccaggtaaactgg
caacaacagcgtttccaagacattacttccaaacttggacattttctcaagcaggcagga
ttcaaagactctgatgtttactacatccccagcagcggcctgtcaggagagaacctcacc
accaggagttcagtgccagagctcacatcctggtactctggccccagcctgatgcagcag
attgacgccttcaaagcccctctgcgatctgtagaaaaaccgttccgactgtgcgtttcc
gatgtgttcaaagaccagggttcaggcttctgtgtcaccgggaagatcgaggccggttac
attcagaccggagaaagaatactggctatgccccccaatgaaacctgcacggtcaaaggt
atcactcttcacgatgagcctctagactgggctgcagcaggagaccatgtcagcctgacg
gtcaccggcatggacatcatcaagatcaatgtgggctatgtgttctgtgatcccaaggag
cctgtgcgagtgtgtactcggttcagagcccggatccttctcttcaatatcgaggtcccc
atcacaaaaggcttcccagtattgctgcattaccaaacagtgagtgagccagccaccatt
aggaaactgataagtgttctacacaaaagcagcggcgacgtcatcaagaagaaaccaaag
tgtttgagtaaaggtatgaatgccatcgtggagatccagacgcagaggccggtggcatta
gagctgtacaaagactacaaggaactcggccgcttcatgctcagatatgtcggctccacc
atagctgcaggggtcgtcactgagatcaaagaatga
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integrated database retrieval system
