Notothenia coriiceps (black rockcod): 104963487
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Entry
104963487 CDS
T04920
Symbol
frem2
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 2
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04512
ECM-receptor interaction
ncc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104963487 (frem2)
04518 Integrin signaling
104963487 (frem2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ncc04091
]
104963487 (frem2)
Lectins [BR:
ncc04091
]
C-Type lectins
Lecticans
104963487 (frem2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
DUF3377
Podoplanin
Motif
Other DBs
NCBI-GeneID:
104963487
NCBI-ProteinID:
XP_010790385
UniProt:
A0A6I9PRP0
LinkDB
All DBs
Position
Unknown
AA seq
3120 aa
AA seq
DB search
MMFHRLLLCFSVTGLVFAEPDSSGLFYALRSELSEDAILVANNGIRVPFGRSIFIDPIND
LVIQTQPGDRCSITVLDNDPLSQRPGHLSPKKFPCDFGPNEVTYSHYGSRSPAKDRVRLQ
LRYDAQTETVIIPFMMEVEVVFTQLELLTKNMPLTVDNLKAISNPIDKKILEFTYDRDSH
KCEVTSLSSGSALPRYGKLIDGGKLSKMMDCDEFTQADIRYEHTFDRKSPNRDYVPMVVE
LHDKEGNLVKQEYFHLMIRIKEGEENTPPKPSFVSMMMMEISQFVMTALTPDMLAAEDAE
SDPDELIFNITSPLSYEEGYIVSTDDRNLPITSFYQRDLRDLKIAYKPPSLDSDTERIFQ
LEFEVVDTDGAISDPFAFMIVVKPMNSLAPVVTRNTGQLLYEGQSRPLFNAHNLEISDED
NLDTVTITVVDGLRHGDLMVLGSQRQLFTPADLTTGVVVYQHDGSDTYSDNIVFKMSDGK
NEVEFLFPITIVPTDDEPPIINANTGVVLFKNQMMPISPLMLSAADIDSEDSTIKFTIVP
PFSTIGTVLLRQSDAPEDPSSWKFNAEDEVYEKEVPEWLQKDITDGKLFYKHTGPHNTYT
VMDQFVFKVQDDNDPPNESGESVFIIRVLPIDDVPPELFPGTTLQMTVQEYKITHFNKDV
LRYTDLDSEDRDLKYTVIQPPVDTDENNPVVFGSLVLTDSPDTEVTEFTQAQINHHKISY
GPPDIELGITAHVVQFRYTVEDTAGNSVEGTFTIYLQPVNNKPPEITNTGFTVSERGIHI
ISIAELDTTDLDTDSKDITFTLSQPPKHGQVQVAFTDLEKKELFRLEDISEGKISYIHGG
EETTSDEFQLDVSDGFHVVTVTVKVNVRPVDDETPSISLPAGTIGSHIDVLENGATEITT
NVIQGRDDDTDDLQLTFIVEDPPIMGEILVKGVPASRFTQADIINGVVVYAHTSGEVGLS
SQLDGFNLTLTDMSDDWTVGGNKVNGVQVRVTILPVDSQAPEVGVGIQFSVIEGEKYAIG
PEHLNADDNDTPTDDILCTIIVQPTVGYVENISPAPGSEKSRSGTAISAFTIRDIRERNI
YFVQSIHKGVEPVEDRFTFRCSDGINFSENHFLPIVIIPANDEKPEIYLREIVVMEGMNI
VIDTPILNGADVDIPPEELVFIISKPPKHGAILNQLSTGSVLVTNFTLEQIREASSIIYE
HDDSETTEDSFDITLTDGKYSVQKTATVMIIAVDDETPRMLINDGLEVEIGEAKEINSKV
LKATDLDSYDSTLTFIIRFGPGQGLLQRKIPSGSLENITLGMNFTQAELDAGLILYTHNG
QEGIRDLLKFDVTDGINPLIDRYFYITVGSIDMVFPDVVSKGVSLREGGRVTLTTDLLST
TDLNSPDENLVFTVTRAPVRGHLECTDTPGMPIASFTQLQLAGSKVYYIHTSDDEVKMDS
FEFEVTDGFNPIFRTFRVSIVDVDNKKPVVTVNNLVVTEGQIKLITPFELTAEDQDTSEK
LLRFTVTQLPVHGKLLYNKSTPVTGFTKQDLNENLISYKHDGTESSEDSFSFTITDGTHT
DFYIFPDTVFETRHPQTMKITIVAIDNGVPQIVVNKGAPTLKILSIGHLGFPLSSKVLRS
EDRDSTPASLVFHVTTQPKHGYIINLGQGNNSINTFSQADIDDLKICYVLRNEENVTSDV
FQFSVEDDGGNKLKGQQFRLDWAWISLEREYYVVDEEDKFLEVVLRRRGYLGETSFIGIG
TQDGSAKKDEDFKGKSQRQVQFNPGQTTATWRVRILTDGKYEQAETFQILLSEPVMGVME
FPDTAIVEILDPSDESTVFFPAQIHSVEEDVGELFIPVHRSGDISEELMVVCYTQQGSAS
GTIPTTVLSYSDFISRPEEHGSVLRFEKGEREKQCRVVVIDDSLYEGEESFNVTLSLPVG
GRLGKHYPTSKVNILEDTNDAPVFYFGEVEYHVDESDGYVEVKVWRTGTDLSKTASATVR
SRKAEPVSAEAGIDYVGISLNLDFAPGVSMQTFRVTILDDLGQPELEGIESFEFVLRMPV
NGILGEPGMATVFINDSVSDLPKVQFREPVYSGEESDGHLTATVYRSGDITHRSTVRCYT
RQGSAQVASDFDERPNTETSIIIFLPGEAEKPCILSLVDDTLYEEGEELRLVLGNPKSDS
QFGASVGALKETLVKIKDTADKPIIRFLETKMSVSEPKEAGTVATVRIPVVRVGDTSKVS
VVRVHTKDGSAISGEDYYPVSQDIEFNQGDKEHVVEVEVLFDGVREMREAFTLHLKPDEN
MVAETQVTKVIVYIEETNSMADVTFPSLPNVVSLLHYDDVARTPDNLHPPAGYPVICVTA
CNTKYPDYDKTGSICVSEHINNTLTRYRWLISAPAGPDGVTSPMREVDFDTFFTSSKMIT
LDSVYFQAGSRVQCAARAVNSNGDEGLELSSPIITVSQEEGMCQPRKMGTVGAEPFSAKL
RYTGVDDPKHPNLIKVTVTMPHIDGMLPVISTRPLMNFELTLSPDGTRVGNHRCSNLLDY
NEVTTGHSFITASTRSPESIGDTAPYQFSDSLRGNSTLRFYRNLNLEACLWEFTSYYHMS
ELLTDCGGTIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGTGGWQHFDLQSELRLTFVY
DTAILWKDGIGSPPQAELQGALYPTSMRINEQGRLVVNFRTKARFRGLFVHSHSEGRIQR
AATSMVMSVEHPGLTFNLTLVRSEPSYNQPVQQWTFTSDFAVRDYSGTYTVKLIPCTTSQ
NMEYTLPPVCSPREPVTFDLDIRFQQVSDPVAVEFSLNTQMFLLSKRTXSDGSMGFAQET
DVAFSEGDTVYGRVMVDPVQNLGDSFFCSIEKVFLCTGADGYVPKYNPTKFEFGCLADSP
SLLYRFKIIDKAQPETQARVFGDVSFNAVLALDDPSAMSLVRQPGSDGFRVDSTAMFQVA
AGREWFIHTIYTVRSKENAHRGIGKRSLEYHSLASTSKDLALTPSNGKSHRARRSAGDEV
PEITEDIGADNNRGTNIMHIDLDRNKRRAVGSNELFANGLEPSELNTQYEEDGVVTVVGV
LVGLLLTILIIVTIVLVLRSRQKDGKEGWREEVQEVVKGSVSTEPMLVVRMQDCHNSSEV
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccacagacttcttctgtgcttttcagtaactggacttgttttcgcggagccc
gacagctcgggattattttacgctctgagatctgaactgtcagaagatgcaatcttagta
gcgaacaacggaatacgtgtgcctttcgggagatcgatcttcattgatcccatcaatgat
ctggtgattcagacgcagccgggagaccgctgcagcatcaccgtcctggataacgaccca
ctctcacagagaccgggacatctctcacccaaaaagtttccgtgtgatttcggtcccaat
gaggtgacatactcccactacgggtcgagaagtccggctaaagacagagtgaggctgcag
ctcaggtatgatgcgcaaaccgaaaccgttattatcccgttcatgatggaggtggaagta
gtttttacgcagctagagttactcaccaaaaacatgcctcttactgttgataacctcaaa
gcgatcagcaatcccattgataaaaagattttagagtttacttatgacagagactctcat
aaatgtgaagtgacgtccctgtcaagtggcagcgctctgcctagatatgggaagctgatt
gatggggggaaactttctaaaatgatggactgtgatgaattcactcaagctgacatccga
tatgagcacacgtttgaccgcaaatcccctaacagagattatgttcccatggttgtagag
ctgcacgataaggaaggcaacttggtgaaacaggagtatttccaccttatgattcgcatt
aaagagggagaagaaaacactccccccaaacccagctttgtgtccatgatgatgatggag
atcagccagtttgttatgaccgccctcacccctgatatgctcgctgctgaagatgcagag
tcagacccagatgagcttattttcaacatcacatctcccttatcctatgaggagggctac
atagtcagcactgatgacagaaatcttcccatcacatctttttaccagagagacttgcgt
gatctgaaaatagcttacaagcccccctccctggactcagacactgagaggattttccag
cttgagtttgaggtggtagacacagacggggccatctctgacccctttgcttttatgata
gttgtgaagccgatgaactccttagcgcctgttgtgacacgtaacactggtcagctgctg
tacgaggggcagtctcgtcctctcttcaatgcccacaacttggagatcagcgatgaagac
aacctggacactgtcaccatcacagtggtggatgggctacggcacggggacctcatggtg
ctgggctctcagaggcagctgttcacacctgctgaccttacaacaggggtcgttgtttac
cagcacgatgggagcgacacatacagtgacaacatagtctttaagatgtcagatggtaaa
aacgaagtagaattccttttccccataacaatcgttcccactgatgacgagccacctatt
ataaatgccaacaccggcgtggtgctattcaaaaaccagatgatgcctatttctcccctc
atgctcagcgctgcagatattgactctgaggactcaactattaaattcactattgtccct
cccttttctactattggcacagtgctcttaaggcagtcagatgccccagaggacccctcc
tcttggaaatttaatgcagaggatgaagtgtatgagaaagaggtgccagagtggcttcag
aaagatatcactgatgggaagttgttttacaagcacactggccctcacaacacatacacc
gttatggatcagtttgtgtttaaagttcaggatgacaatgacccccctaatgagtcaggg
gagagtgtatttataatccgggttttacccatagatgacgtcccccctgagctgttccct
ggcaccacactgcagatgaccgtacaggagtacaagatcactcatttcaacaaagatgtt
ctgcgctacaccgatttggactctgaggatcgtgacctcaaatatacagttatccagccc
ccagtagatacagatgaaaataacccagttgtgttcggttctttggttctgacggacagc
cctgacactgaagttactgagttcacacaagcccaaattaatcatcataagatttcatac
ggcccccctgatattgagcttggaataacagcccacgttgtacagtttcgttacactgtt
gaagacacggctgggaacagcgtagaaggaactttcactatctacctccagcccgtaaac
aacaaacccccagagattacaaacacaggctttactgtgtctgaacgtggtattcacatc
atcagtattgcagagctggacaccacagacctcgacacagacagcaaagacatcaccttt
actcttagccagccccctaaacacggccaagtacaggttgcattcactgacctagagaaa
aaagagcttttcagacttgaagatatctcagaggggaagatatcatacattcatggcggg
gaggagacgacgagcgatgaatttcagctggatgtcagtgatgggtttcatgttgtaacc
gtgacggtcaaagttaacgtaaggcctgtcgatgatgaaactcccagcatcagcctgcct
gcgggaacaattggctctcatatagatgtgctggaaaacggagccacagaaatcacaact
aatgtaattcaaggccgtgatgatgacacagatgacctccagctgacctttattgtggaa
gatcctccaattatgggtgaaatattggttaaaggagtgcctgccagtaggtttacacaa
gctgatattattaatggtgtggttgtgtatgcacacaccagtggtgaagtaggtctctcc
tctcagctggatggctttaatttgactctcacagacatgtctgatgattggacagtgggt
ggcaataaggtcaacggagttcaggtccgagtcactatccttcccgttgacagccaagcc
cctgaggtcggagtcggaattcaattcagtgtcattgaaggggagaaatatgctataggc
cctgagcacttgaacgctgatgataatgacactccaacggatgatatcctttgcaccatc
attgtccagcctactgtcggctatgtggaaaatatttcacccgctccaggctctgaaaag
tccaggtcaggaacggctatcagtgcttttacaatcagagacatcagggagaggaatatc
tactttgtgcagagcattcacaaaggcgtagagccagtggaagacagattcacatttagg
tgctctgatggcatcaatttctcagagaaccatttcttaccaattgtcatcatccctgca
aatgatgaaaagcctgagatttatttgagggagatagttgtgatggagggcatgaacatt
gtcatcgacactccgattctgaatggggccgatgtggatattccacccgaggagctggtc
ttcatcatttccaaacctcccaaacatggtgccattttaaaccagctgtcaacagggtca
gttttggtgactaatttcactttagagcagattagggaggcgtcaagtattatttatgag
cacgatgactcagagacaacagaggacagctttgatatcactctgactgatggaaagtac
tccgtgcagaagacagccacggtaatgataattgctgtggatgacgagacccccagaatg
cttatcaacgacggcctggaggttgaaatcggggaggccaaagagatcaacagcaaagtg
ctcaaagcaaccgatttagattcatacgacagtactctcacattcatcatcaggtttggg
cctgggcagggcctcctgcagaggaaaatcccatctgggtctctggagaacatcacgctt
ggcatgaatttcacacaagctgaactcgacgcagggcttattctctacacacacaatggt
caggaaggcattcgagacttgcttaagtttgatgtcacagatggaattaacccacttatt
gatcgttacttctacatcactgtggggagcatcgacatggtgttccctgatgtggtcagt
aaaggcgtgtctctgagagaaggtggcagagtgactttgaccacagatctactcagcacc
actgacctcaacagccccgatgagaacttagtcttcaccgtcacaagggcccccgtcaga
ggccacctggagtgtacagatactcctgggatgcccattgcatctttcactcagctccag
ctggctggcagtaaggtttactacatccacacgtcagatgatgaggtgaaaatggacagt
tttgaatttgaagtgactgatggcttcaaccctattttcagaacattcagagtctctatc
gtggatgttgataataagaaacctgttgtgacagttaataatttagttgtcacagaaggg
caaattaagctgattacaccattcgagctcacagctgaggaccaagacacatctgagaag
ctgctgagattcaccgtcacccagctgcctgttcatggcaaactcctctacaacaagtcc
acacccgtcaccggcttcaccaaacaagacctcaatgaaaacctcatcagctacaaacat
gacggaactgaatcctcagaggactccttctcgtttacaatcaccgatggcacacacaca
gacttttacattttccccgacactgtgttcgagactcggcaccctcaaaccatgaaaatc
accattgtggccatcgacaacggcgtcccccagatcgtggtgaataaaggtgcccccact
ttgaagattttgtccattggtcacctgggtttccccctcagctccaaagtactgagatca
gaggacagagacagcacccccgcctccctggtgttccacgtcaccacgcagcccaaacat
ggatacatcattaacctgggacaagggaacaactccatcaacacatttagtcaagctgat
attgatgacctgaagatctgctatgtcttacggaatgaagaaaatgtcacatctgatgtc
ttccagttctccgttgaggatgacggtgggaacaaactcaagggacagcagttccgtctg
gactgggcctggatctctctggagagagagtactacgtggtggacgaggaggacaagttc
ctcgaggtggtgctcaggcggagaggatacctgggagagacctctttcatcggcattggc
acccaggatggtagcgcgaagaaggacgaggatttcaagggtaagtcccagaggcaggtc
cagttcaacccggggcagaccaccgccacgtggagggttcggatactgactgatgggaag
tacgagcaggcggagaccttccagattctgctctcggagccggtgatgggggtgatggag
ttccccgacacagcaatagttgagatcctggatcctagtgacgagtcaactgtgtttttc
ccagcacagatccactcagtggaggaagatgttggagagctgttcatcccggtacaccgc
agtggagacatcagcgaggagctcatggtggtctgctacacacagcagggttctgcttca
gggacgattccaaccaccgtcctgtcttactcggatttcatctcccgcccggaggagcat
ggcagcgtccttcgctttgaaaagggtgagagggagaagcagtgtcgcgtggtggttatc
gacgactctctgtacgagggagaagagagcttcaacgtcactctgtcactgcctgtcggg
gggcgtctgggaaagcactaccccacctccaaagtcaacatcttggaagacacgaatgat
gctccagtgttttactttggagaggtggagtatcatgtggatgagagtgatggatacgtg
gaggtcaaagtgtggaggacggggacagatctgtccaagacggcctccgccaccgtgcgc
tctcgcaaggccgagcctgtctctgcagaagccggtattgactacgtgggcatcagtctt
aacctggacttcgccccgggcgtcagcatgcagaccttcagagtcaccattctggatgac
ctgggacaaccagagctggagggcattgagagctttgagtttgtcctccgtatgccagtg
aacggcattctgggggaacctgggatggctacagtcttcatcaatgactctgtgtctgac
ttgccgaaggtccagtttcgtgagccggtgtactctggagaggagagcgatggtcacctc
acagcgacagtgtaccgcagcggggacatcacacacagatccacggtgcgctgttacacc
cgtcagggctcggcacaggtcgcctccgactttgatgagcgacccaacacagaaacatct
ataattattttcctaccaggagaggcagagaagccatgtattttgtcactggttgatgac
acgctgtacgaggaaggagaagagctgcgattggtcttaggaaacccgaagagcgactca
cagtttggagcatcagtgggagctctgaaggagaccctggtgaaaatcaaggacacagct
gacaaaccaatcatacgttttttggaaaccaagatgagcgtaagtgaaccgaaggaagcc
ggcaccgtggcaactgttaggatccctgtggtacgagtgggtgacacatcaaaggtttca
gtggttcgtgttcacactaaagatgggtctgctatctcaggggaggactactaccctgtg
tctcaagacattgagtttaaccaaggggataaggaacatgtggtggaggtggaggtgttg
tttgatggcgtccgagagatgagggaagcctttactctccacctgaagcctgatgaaaac
atggtggctgaaactcaggtaactaaagtgatagtttacatcgaggagaccaacagcatg
gctgatgtcaccttcccctccctgcctaacgtggtgtccctgctacactacgacgacgtt
gccaggacaccagacaacctccatcccccagccggctatccagtcatctgtgtcacggct
tgcaatacaaaataccccgactatgacaaaaccggctctatctgtgtcagcgagcacatc
aacaacaccctgacccgctaccgctggctcatcagcgccccagctggccctgatggtgtc
accagtcccatgagagaggtggacttcgacaccttcttcacgtcctccaagatgatcaca
ttggactcagtgtacttccaggcaggctccagggtccagtgcgctgccagggcagtgaat
tctaatggggatgagggtttagagctcagcagccccatcatcaccgtcagccaggaggaa
ggtatgtgtcaaccacgcaagatggggactgttggcgctgagcctttctctgccaagcta
cgctacactggagtagacgacccgaaacaccccaacctcatcaaagtgactgtcaccatg
cctcacatcgatggaatgctgccggtgatctcgactcgccctctcatgaactttgaactg
actctcagtccagacgggacccgggtcgggaaccatcgctgctccaacctgctggattac
aacgaggtcaccaccggtcacagcttcatcaccgcctctacgcgcagccccgaaagcatc
ggagacacagcgccgtatcagttcagcgactctctgcgggggaacagcacattgcgcttc
tacaggaacctcaacctggaggcctgtctctgggagttcaccagttactaccacatgtct
gagctgctcactgactgcggaggcaccatagggactgatggacaggtgctgaatcttgtc
cagtcctacgtgaccctccgcgtgcctctctatgtgtcctacgtgttccactctccggtg
ggaacgggcggctggcagcacttcgacctgcagtcagagctgcgtctcactttcgtttac
gacacagccatcctctggaaagatggcatcggaagccccccgcaggccgagctacagggt
gcgttgtatccaacaagcatgcgcatcaacgaacagggacgcttggtggtaaacttccgc
accaaggctcgtttcaggggtctgttcgtgcactctcattctgaaggcagaatacaaaga
gcagccacctccatggtaatgagtgtggagcaccccggcctgacctttaacctcacctta
gtgaggagtgagccttcctacaaccagccggtccagcagtggaccttcacctctgacttc
gctgtgagagactactctgggacttatacagtgaagctgatcccctgcacaacatcccag
aatatggagtacactcttccacctgtctgcagtcccagagaacctgttaccttcgatctg
gacatcagattccaacaagtaagcgatccagttgcagtggagttcagcctgaacactcag
atgttcctgctgtccaagaggactnnctctgatggctccatgggctttgctcaagagact
gacgtagccttttctgagggtgatacggtctatggccgtgtgatggtggaccctgtgcag
aacctgggggactctttcttctgtagcatagagaaggtgttcctctgcactggtgcggat
ggatatgtgccaaagtacaaccccaccaagtttgaatttggctgcctggctgactcccct
tcattgctctacagattcaagattattgacaaagcacagccagagactcaggcacgtgtg
tttggtgacgtcagttttaatgctgtgctggcactggatgatccgtcagccatgtccctt
gtcagacagcccgggtctgatggctttagggtggactctacagccatgttccaggttgct
gcaggccgtgagtggttcattcacacaatttacaccgtccgctccaaagagaatgctcac
agaggcattggaaagcgcagcctggagtaccattccttggcttccacgagcaaagatctt
gccttgaccccatctaatggcaaaagtcatcgcgccaggagatcggctggcgatgaagtc
ccagagatcactgaggatattggagcagataataaccgcggtactaatatcatgcacatc
gatttggatcgcaacaagcgccgggcggtggggtcgaatgagctgtttgccaacgggctg
gaacccagtgagctgaacacacagtatgaagaggatggagtggtgactgtggtgggggtg
ctggtggggctgctgctgaccatcctgattattgtcaccatcgtactggtgctgagatcc
agacagaaagatgggaaggaaggctggagggaggaggtacaggaggtggtgaaaggctcc
gtcagtacagagcccatgttggtggtgaggatgcaagactgccacaacagctcggaggtc
tga
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integrated database retrieval system
