Notothenia coriiceps (black rockcod): 104963603
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Entry
104963603 CDS
T04920
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104963603 (ddx20)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104963603 (ddx20)
Spliceosome [BR:
ncc03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
104963603 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RNA_pol_3_Rpc31
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
104963603
NCBI-ProteinID:
XP_010790517
UniProt:
A0A6I9PQQ4
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MAASVRRAAHDIETRKRTDDVLLSEGIDFSSLLLSQPVLEGLSSAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AVEGLECHVFIGGRPVSQDKTNLKKCHIAVGSPGRIKQLIELEMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMREPTFVRLNPSDLGLKG
LKQYYKLVQSHPLPHMVFQEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLTQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCALNLSMLPSTIEPSLMDESCDWDVCT
EASTPGLLPVPSTRTEKKKRTKQVTDEAMEHSSIQRKPEKTRPAPRPGPHSEGNTRRAPP
PEVSLPQPPPQVVPTRKELQDALPKIPPLSSFKKCRSRFMTLEEADLDFHSFITTGLGRS
VEVIKDFRGGEDGDGHRESTILNDDGAQSFKQKRWKSDLPPPKGVPSSSSSQSEEDDDEP
DQTRGGEHRTISEPQPEARPTPIVSKEKAGSTTSSSSSSSYISTPNPYPQPESNASAWCQ
PKNSESVPTVRSSGHLRQTAPTQNGRNESRKVREKNAKQSKRVSEKMRREQKRERDEEEH
VDEDNEEEEEEGDWSAESYWRASYRAWNDYYASMSPVQEQGYQSYYSVAHNWMAAYRMNA
VYMEELLKD
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccgtgaggagagcagcccacgacatagaaacacgaaagcggaccgatgat
gtgcttttatcggagggaatagacttcagctccctgctgctctctcagcccgtgttggag
ggactgtcctccgcaggcttccagaaaccctcccctatccagctgaaggcgatcccgctg
ggccgctgcggactcgatttgattgtacaggccaagtctggcacagggaagacatgcgtg
ttctgcaccatcgccctggactcccttgtcctggagaatcctgcgactcaggttcttgtc
ctggctcctacacgtgagatagcggtgcagattcactcagtggtgatggctataggctgt
gccgtggagggtctcgagtgccatgtatttatcggggggaggcctgtgagtcaggacaaa
accaatctgaagaagtgccatatagctgtgggctcgcccggtcgaatcaaacagctcatc
gagttggaaatgttgtccaccgccagcatcagactatttgttctggatgaggcagacaag
ctgctggaggaaggcagctttcaggaacagataaactggatcttttcctctctgcctgtg
aacaaacagatgcttgcactctctgccacctacccagagtccctcgctcagcacctgacc
cgctacatgagagagcctacttttgtcagactcaatcccagtgatctgggccttaaaggc
ctgaagcagtactacaagctggtgcagtcccatcctttacctcacatggttttccaggaa
aaggtgcagcatttgctggagcttttcagtaaaatcccattcaaccaggcgctggtgttc
tccaatctacacacaagggctcagcacctggcagacatcctgtcctccaaaggcttacct
gctgtttgtatctcaggtggtctgactcaggaccagagactggaggccatgtccaaactg
aagcagtaccagtgcagggtgctcatctccactgacctgacttccagaggtatagatgca
gagaaggttaacctggtgattaatctggacgtgccgcaggactgggagacgtatatgcat
cgaattggacgtgctgggcgcttcggcactcaaggactggctgtgacctactgttgccat
ggtgaagaggagaacaagatgatggccatcgctcaaaagtgtgccctgaacttgtctatg
ttgccgtccactatagagcctagtttgatggacgagtcatgtgactgggatgtctgcact
gaagcttctactccaggccttttacccgtgccctccaccaggacagagaagaagaagcgt
accaagcaagtcactgatgaagctatggagcactcaagcattcaaaggaagccagagaag
acccgtccagcacccagaccgggaccccacagtgaagggaatacaagaagagcacctccc
ccagaggtctctctcccacaaccccctcctcaggtggtgcccactcgaaaagagctacag
gatgctctaccgaagatccctcccctcagctcattcaagaaatgtaggtcaaggtttatg
accctggaggaagctgatctggacttccacagcttcatcaccacagggttgggtagatca
gtggaggtcatcaaggatttcagaggtggagaggatggtgatggacatagagagtctacc
atcctaaatgatgatggagctcaaagtttcaaacaaaaaaggtggaaatctgatcttcca
cctccaaagggagttcccagttcttcaagctcgcaatctgaggaagatgatgatgagcca
gatcagacgagaggaggggaacacagaacaatctctgagcctcagcctgaagctagacca
acacccattgtgtctaaagaaaaggcagggtccactacatcatcatcatcatcatcatca
tacatttctacacccaacccatatccccagccggaatcaaatgcaagtgcttggtgtcag
cccaagaactctgaatctgtacccactgttagatcgagcgggcatctcaggcagacggct
ccaacgcaaaatggaagaaatgaatccagaaaggttagagaaaagaatgcgaaacagagc
aaaagggtttcagagaagatgcgcagagagcaaaagagggaaagggatgaagaggaacat
gttgatgaggataatgaagaggaggaagaggagggggattggagtgctgaatcttactgg
agagccagctacagagcctggaatgattactacgcctccatgtctcctgtccaagagcaa
ggttaccaaagctactacagtgtagctcacaactggatggcagcctatcgtatgaatgct
gtctacatggaggaactcctaaaagactga
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