Notothenia coriiceps (black rockcod): 104963624
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Entry
104963624 CDS
T04920
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncc04147
]
104963624
00535 Proteoglycans [BR:
ncc00535
]
104963624
00536 Glycosaminoglycan binding proteins [BR:
ncc00536
]
104963624
Exosome [BR:
ncc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104963624
Proteoglycans [BR:
ncc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104963624
Glycosaminoglycan binding proteins [BR:
ncc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104963624
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
104963624
NCBI-ProteinID:
XP_010790536
UniProt:
A0A6I9PZ76
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MKCEERGGMKGSPDVALRDGSIPADLRVLLNAAPLSRDPSPTLSLQNHRLGIQQAETIQG
VIGELRIVGDPRAAERHCEEDGDDSDMASGDGSGDEERNSRPAGETLRWTTTPPSSRPIQ
QPPLSKKDEVLTERDTASDSRHSSVSVENRPGLPGSSGAKGEKGSQGDSGLKGDRGPIGP
KGETTSSSGSGSRGGSRGEKGELGEKGLKGSAGFGYIGKKGEPGPAGPVGPPGPPGAATE
VTVGGDGSVASRTPGPRGPAGPPGTSGPEGPPGTDGEPGDPGEDGKTGLEGPPGFPGTPG
DPGLKGDKGDRGDGQPGPRGPPGLPGPGIRSTFVDMEGSGFPDLESVRGLPGLPGPPGPP
GSPGPSTTGTASSSGAFGPPGKDGAAGQPGLPGIPGTDGSPGASAPKGEKGDAGELGLPG
AIGQKGSGGDPGVKGDPGETGLAGLPGPLGPVGKPGPPGPPGSSYRVGFDDMEASGGGFS
NGLPGARGPEGRQGSSGLPGLPGKSGLPGIPGQKGSEGSLGRDGQPGLDGFPGPQGPKGD
GGDKGDRGEPGRDGSGLTGPPGPPGPPGQIIYQTDGNAGGVAGDVGRAGENGLPGQAGFP
GPIGPRGDRGEPGVPGYGVKGEKGEPGLVIGPDGSLLHLDGLSGQKGDIGPPGPVGLAGP
YGPSGIKGEFGMPGRPGRPGVNGYKGEKGDTSGGSGYGYPGVPGQPGNPGPPGPPGPTSP
FDRFNRYDDTSRNYPATKGDKGEQGDHGLPGIPGTAPNFDIYAFKNELKGERGDVGVKGE
KGEQSGGYYDQRFGGVQGQPGPPGKPGLEGPKGDSVMGPPGPQGPPGTPGIGYDGRPGVP
GPPGPPGPPALPEPYRPNNPVSIPGPPGPPGQPGSPALSSGVTVLRSYETMVATARRQSE
GTLIYILDKADLYLRVRDGLRQVMLGDYNPFFRDLENEVAEVQPPPVIVYPDTQDQSQNN
GAGHYSHGGPVIRPIEPPPQPPVNPRYPPQYDPRFPDPRQTGHTDGRFVPHQTDNRYSVT
PRRPSPPIPQPAVPVEPSASGLHIIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRA
FLSSKLQDLYTIVRRADRDNFSIVNLKDQVLFDNWESIFGDNTNKMRENVPIYSFDGRDT
LRDSAWPEKMVWHGSNNKGHRQTDHYCETWRTGDHAVSGLASSLQSRQLLQQSSSSCSGS
YIVLCIENAFTTHSKK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtgaggaaagaggcgggatgaaggggagccctgacgtcgcgctgagagacggt
tcgatacctgctgatctgagggtcctcctgaacgcagcgccgctgagccgggacccgtct
ccaacgctgagcctccagaaccatcgcctcggcatccagcaggccgaaaccatacagggg
gtgatcggggagctgaggattgtgggagacccccgcgctgctgagcggcactgcgaggag
gatggagacgactcagatatggcttcaggtgatggaagtggcgacgaggagaggaattca
agaccagctggggagacgctcagatggacgaccactcctccctcttcccggccaatccag
cagcctccactctccaagaaggacgaggtgctcacggaaagagacacagcaagtgactca
cgccacagttcagtctctgtggagaacagacccgggctgccagggtcctcaggggctaaa
ggagagaagggcagccagggggactcaggcctgaaaggagacaggggtccgatcgggccg
aagggagagaccacctccagctctggctctggatcacgggggggaagccgtggagaaaag
ggagaactgggggagaagggattaaagggcagcgccggcttcggctacatcggaaagaag
ggagagccgggccctgctggccccgtcggcccccccggcccgccaggggccgcaactgag
gttacagttggcggtgacggctcagtggcttccagaacccccggaccccgaggaccagct
ggacccccgggcacatcaggcccagagggaccaccagggactgatggagagccaggtgat
cctggtgaggatggaaaaaccggccttgagggaccccctggcttcccaggaaccccgggt
gatcctggacttaaaggagacaagggagaccgtggagatggtcagcccggccccaggggt
ccaccaggacttcccggaccaggaatcagatctacctttgtggacatggaaggctcaggg
ttccctgatctggaatctgttcggggactgcctggcctaccaggtccccctggtccccca
gggtctcctggtccctctacaacaggcacagcatcgagttctggggctttcggaccccca
ggaaaggacggtgcggctggtcaacctggcctgcctggtattccagggactgacggcagc
ccaggagcgtctgctcccaaaggagaaaagggtgatgcaggcgagctgggtcttccagga
gcaattggacagaaggggtctggaggagacccaggggtaaaaggtgatccaggagagacc
ggactggctggtctgcccggacctctcggaccagtcggaaagccggggcctcccgggccc
cctggatccagctaccgcgtcggatttgatgacatggaggcctctggtggaggtttcagc
aacggacttcctggtgccagaggacctgaaggaagacagggttcttctggcttgcctgga
cttcctggtaaatctgggctgcctggtatccccggtcagaagggcagtgaagggtccctc
ggaagagacggacagcccgggctggacggcttccccggacctcagggaccaaagggtgac
ggtggtgacaaaggagacaggggtgagccaggtcgggatggatccggactcactggcccc
cccggcccacctggacccccgggacaaatcatctaccagactgatggcaatgccggcggt
gtggctggtgatgttgggcgggcgggagaaaatggtttacctggtcaagctggattccct
ggtcctattgggccaaggggtgacagaggagaaccgggtgttccaggctatggagtgaag
ggtgagaaaggtgaaccaggcttagtgattggacctgatggaagtctgttgcatctggat
ggtctatcgggtcagaagggagacattggaccacctggacctgttggactcgctggcccg
tatggtccttctggaataaagggtgaatttggaatgcctggaagacctggtcgtcctggt
gtgaacgggtacaaaggagagaaaggagatacatcaggaggttctggctatggctaccca
ggagtgcctgggcaaccaggaaaccccggaccacctggaccccccggaccaacctccccc
ttcgatcgcttcaatcgctatgacgacacttcaaggaattacccagcaactaaaggagac
aaaggagagcaaggggaccatggactgccgggaatcccaggaacagcccctaactttgat
atttacgcattcaagaatgagctgaagggagagcgtggagacgtgggtgtaaagggagaa
aagggagagcagagtggaggatattatgaccaacgttttggaggagtacaaggacaaccg
gggccacctggtaaaccgggtctagagggtccaaagggagactctgtaatgggaccccct
ggaccccaggggccaccaggaaccccagggattggttacgatgggcgtccaggtgttcca
ggaccccctggacctccaggacctcccgcacttcccgaaccatacaggcccaataacccc
gtcagtattcctggacctcccggtcctcctggccaaccaggaagtccggccctctcctct
ggggttactgtgctgaggtcatatgaaacaatggtagctaccgccagacgccagtccgag
ggcaccctcatctacatcctcgacaaagcagacctctatctgagagtacgcgatggactg
cgccaagtcatgcttggagattacaaccctttcttcagagatctggagaacgaggtggca
gaggtccagcccccccctgtgatcgtgtaccccgacacccaggatcagtcccagaacaac
ggagcgggccattactcccatgggggtccagtcatacgacccattgagcccccaccacag
ccacctgtgaatccccgataccccccacagtatgatcccagattcccagacccgagacag
acaggtcacacagacggacggttcgtcccccaccagactgacaacagatactctgtaact
ccaaggagacccagccccccgatcccgcagcctgccgtccccgtggagccctcagcatca
ggacttcatatcattgccttgaatgcccctcaaactggcaacatgcgagggattcgtgga
gccgacttcctgtgcttccagcaggcccgtgctgtgggcctgaagggaaccttcagagcc
ttcctgtcctctaagctccaggacctgtacaccatcgtccgcagggccgaccgcgacaac
ttctccatcgtcaacctcaaggaccaagtgttgttcgacaattgggagtcaatatttggt
gacaacacgaacaaaatgagggagaatgtaccgatctattccttcgatggtagagacact
ctcagagacagcgcatggccagagaaaatggtctggcatggatcaaacaacaaaggccac
cggcaaacagaccactactgtgaaacatggcggacgggcgaccacgccgtgtctggcctg
gcatcgtcactacagagcagacagctcctgcagcagagctccagcagctgctccggatcc
tacatcgtcctctgcatcgagaacgccttcacaacacactcgaaaaaataa
DBGET
integrated database retrieval system
