Notothenia coriiceps (black rockcod): 104964025
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Entry
104964025 CDS
T04920
Symbol
blm
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03440
Homologous recombination
ncc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104964025 (blm)
03460 Fanconi anemia pathway
104964025 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncc03032
]
104964025 (blm)
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104964025 (blm)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104964025 (blm)
DNA replication proteins [BR:
ncc03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
104964025 (blm)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
104964025 (blm)
Bloom's syndrome complex (BTR)
104964025 (blm)
FA (Fanconi anemia) pathway
104964025 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BLM_N
DEAD
BDHCT
Helicase_C
RecQ_Zn_bind
HRDC
RQC
DUF1178
Motif
Other DBs
NCBI-GeneID:
104964025
NCBI-ProteinID:
XP_010791039
UniProt:
A0A6I9PJ67
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MSSLPQNNLEEQLARHSTAAQGKLSLSKPKPGAFSFKKKSSSGTTKVEVPTKVISSNVLT
NRNVNVPDNSLVTTSPLTFSKKLERPQKSKINSFFPVSSKGKSDSISPTGQTSPAGSAFK
VMTAPTKSDNQTSGTGGIPASLDASLGFPMDDWDDLDDFETPVKAKNDSFSSEMSGKSAN
PPSSLSEEKSLANKKVFSRSEQTHMETDQMEQSLDQTAASPGPGSPETEYKATPVRVTRR
PPHAHRKSVVSDNEEDSQEVLEPFKGMSGNNNKWIDPKVIKINDSEPDDDLDYIPPSPDE
IFYSTSALETRSKSAAAVSKDRPLPSKGPSTTLLKPSNTHSKDNTNEQLFSIMQSICSLV
DTIPDNELIGLSCGSELLLKRAQRKRIIVNSGGSSLTFQQPDSTVTSEPSFKGRLSLSCE
TSSVMSSNSSAPADPQMPSQLKRSSLISGDYDSDHSDSIITQKALHSKNSGTINVKNQSL
CDSPSTYSLESQAFNFSNKTSTDLDGSDLFFSPKRPEPVQNKPKTPAASTAAEDMEHDDF
YNDYFDIDDFNESDIPDYFEEPQNSSSVTAAGKEGGPSKSSWDKKPTTPAPTPKTPKISS
PEPTYRNPAHDRFRGFNFPHSQEMMKIFHKRFGLHQFRFNQLEAINATILSEDTFVLMPT
GGGKSLCYQLPACVLPGVTVVISPLKSLIVDQVQKLTTLDIPATTLTGSITDSEAGRIYM
QLSRKDPIIKLLYVTPEKLCASNKLISALHNLYERGLLSRFVIDEAHCVSQWGHDFRPDY
KRLHELRQKYPKVPMMALTATATPRVQKDILNQLNMTRPQVFTMSFNRTNLKYTVLPKKP
KKVGEECTTWIKKNYPRDSGIVYCLSRKDCDDMAQSLQRSHILALAYHAGLGDSDREYVQ
TKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGDISHCIL
FYSYSDVHRIKRILTLDKEGDRQAKATHLNNLHCMVHFCENMMECRRIQLLAYFGEMKFN
RSFCKEHPDVSCDNCAKPNQYKVRNVSDDVKKIVRFVQENCEKVGQRFGRTAQQSRLTLN
MLVDIFLGSKTAKVQTGMFGTGGAYSRHNADRLFKKMVLDNILMEDLYITQGGQAVAYIS
AGDKAMNVLSGNMQVEFYETESASSIRKHKAAVSKDVSQREQKVQECLKELLDLCKQLGK
AFGIHYYNIFSTATLKKISERLSSNPEVLLQIDGVTEDKLEKYGAEVVQVLQKYSAWQQA
EEPTDTAADGWIDTAQGRSYGGDEEDAESSTYFGSQSAQGQKRKKAPFFKYAKKKAYGNQ
SAGSKGRGNGGNKTWSSSNSRGGYKAAAGRGGRSSAGAASAGRAPGFMAVPTPQTYQRPF
LKPVFSHLG
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtcttccacaaaataacttggaggagcagcttgcgaggcacagcactgctgct
cagggcaagctgtctctgtctaaaccaaaacccggggccttctccttcaagaagaagtct
tcatcaggtacaaccaaggtggaagtgccaactaaggtaatcagctctaatgtgttgaca
aacaggaatgtcaatgtacctgataacagtttggtgactacatctcctttgacattttca
aaaaagcttgagagacctcaaaaatccaaaatcaacagcttcttccctgtaagttcaaaa
ggcaagtcggactccatcagcccaacaggccagacctctccagctgggtctgcttttaag
gtgatgacagctcccactaaatctgacaatcagacaagtggcactggaggcattcccgca
agtctggatgcttctcttggattcccgatggatgactgggatgatttggatgacttcgag
acacctgtcaaagcaaagaatgactcttttagttcagagatgtccgggaagagcgcaaat
ccaccgtcctccctaagtgaagaaaaaagtttagcgaacaaaaaagttttttccagaagt
gaacaaactcacatggaaacagatcaaatggagcagagtttggaccaaactgcagcttca
ccaggacctggatccccagagactgaatacaaggccactccggttagagtgaccagaaga
ccacctcacgctcatcggaagtctgtggttagtgacaatgaagaggacagccaggaagtg
cttgagccctttaaaggaatgtcaggcaataacaacaaatggattgacccaaaggtaata
aagattaatgactcggagcctgacgatgatctcgattatattcccccgtctcctgatgag
atcttttattctacctctgcattggagaccaggtctaaatcagctgctgctgtaagcaaa
gaccgtcctttgccatcaaagggccccagcacaacactacttaaaccctccaacacccac
tcaaaggacaatacaaatgagcaactcttcagtatcatgcagtccatttgctctctggtt
gacaccatccctgataatgaactaataggtctgtcctgtggaagtgagcttctgctgaag
agggctcaaaggaagaggattattgtaaatagcggtggcagttccttgacgttccagcag
cctgacagcactgtgacttctgaacccagctttaaaggaagattgtctttgagctgtgag
acgtctagcgttatgtcgtccaacagctcagcgcccgcggaccctcagatgccttctcag
ctcaagagatcctcacttatctctggggactatgactctgatcactctgacagtattatc
acccagaaggccttgcacagtaaaaacagcgggacaataaatgtgaaaaatcagagtttg
tgtgactctccatcgacctacagcctcgaaagccaagcatttaatttctcgaacaaaacg
agcacagacctggatggttcagatctcttcttctctcccaaaaggccagagccagttcag
aacaaacctaagacgccagcagccagcacagctgcagaagacatggagcacgatgacttc
tacaatgactactttgacatagatgattttaatgagtcagatatccctgattactttgaa
gaacctcaaaactccagctcggtgacagcagcagggaaagaggggggacccagcaagtct
tcatgggacaaaaaaccaacaacacctgcccccacaccgaagactccaaagatctcctcc
cctgaacccacctacagaaacccagcccatgatcgcttcagagggttcaacttcccccac
tcacaggagatgatgaagatttttcacaagcgctttggtcttcatcagttcaggttcaat
cagctagaagcaattaatgcgacaattctctctgaagacacgtttgttttgatgcccaca
ggtgggggtaaaagcctgtgctaccaactgcctgcctgcgtgttaccaggagtcactgtg
gtcatctcccctctcaaatcactcattgtagaccaggtccagaaactcactactcttgat
atcccagcaacaaccctgactggttcaataactgacagtgaagccggaaggatttatatg
cagctctcacggaaagaccccatcattaaacttctctacgtcacccctgagaagctgtgt
gcgagtaacaagctgatctccgccctgcacaacctgtacgagcgaggccttctgtcccgc
tttgtcatagacgaggcccactgtgtcagccagtggggtcatgactttcgcccggactac
aagaggttgcatgagttgcgtcagaagtacccaaaggtcccgatgatggcgctgacggcc
actgccaccccccgagtgcagaaagacatcctcaaccagctgaacatgacgcggccccag
gtgttcaccatgagtttcaacagaacaaacctcaagtacactgtccttcccaagaaaccc
aaaaaggttggcgaggagtgcaccacgtggatcaagaagaactacccacgagactctggc
atagtgtactgcctttcccgtaaggactgtgatgacatggctcagagtctgcagagatca
cacatattagctctggcctatcacgcaggcctgggagacagcgacagagaatacgtgcag
accaagtggatcaaccaggacggctgccaggtcatctgtgccaccatagcctttggcatg
ggcattgacaagcctgacgtgcgctatgtgatccacgccagtctgcccaagtcagtggag
ggttactaccaggagtcagggagagcgggcagagacggagacatctctcattgtattctc
ttctactcctactccgacgtgcaccgcatcaagaggattctcactctggacaaagaaggg
gacagacaggccaaggcgactcatttgaacaacctgcactgcatggtgcacttctgtgag
aacatgatggagtgcaggagaatccagctgctcgcatacttcggggagatgaagttcaac
cgaagcttctgtaaggagcacccagacgtcagctgtgacaactgcgccaaacccaaccaa
tacaaagtgagaaatgtctctgatgatgtgaagaagatcgtgaggtttgtccaggagaac
tgcgagaaagtcggacaaaggtttggccgcaccgctcagcagagcagactaacactgaac
atgttggtggacatctttttagggtctaaaactgccaaggtgcagacgggaatgttcggg
acaggaggagcctactccaggcacaatgctgaccgacttttcaaaaaaatggttctggac
aacatcctgatggaggatctgtacatcactcaaggcggccaggctgtggcgtatatctct
gccggagacaaagccatgaacgtgctgtcaggaaacatgcaggtggagttctacgagacg
gagagtgcgtcgagcatcaggaaacacaaagctgctgtgtctaaggacgtctcccagaga
gagcagaaggtgcaggagtgtctgaaggagctgctggatctgtgcaagcagctggggaag
gcctttggcattcactactacaacatcttctccaccgccaccttgaaaaagatatctgag
aggctttcttccaaccctgaagtcctcctacaaattgatggcgtgacggaagacaaactg
gagaagtacggagccgaagtcgtccaggtgctacagaaatactctgcgtggcagcaggcg
gaggaaccgactgacacggctgcagacggctggatagacacggcacaaggccgctcatac
ggaggggacgaggaggacgcagagtcctccacctacttcggcagtcagtcagcgcagggg
cagaagagaaagaaagccccattcttcaaatatgctaagaagaaagcttatggaaaccaa
agtgccggctctaaaggtcgcggcaacggcggcaataagacgtggtcatcgtccaactcc
agagggggttataaagctgctgcaggccgggggggcagaagctcggcaggagctgcatca
gcaggccgggccccggggttcatggccgtcccgacccctcaaacctaccagagacccttc
ctgaaaccagtcttttcacacctgggctag
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integrated database retrieval system
