Notothenia coriiceps (black rockcod): 104964196
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Entry
104964196 CDS
T04920
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like
KO
K16360
netrin-G3 ligand
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04514
Cell adhesion molecule (CAM) interaction
ncc04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
104964196
04517 IgSF CAM signaling
104964196
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104964196
Cell adhesion molecules [BR:
ncc04515
]
Immunoglobulin superfamily
NGL family
104964196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_9
LRR_14
V-set
Ig_2
LRRNT
Ig_6
DUF7617
Zwei_Ig_N
Motif
Other DBs
NCBI-GeneID:
104964196
NCBI-ProteinID:
XP_010791234
UniProt:
A0A6I9PJL3
LinkDB
All DBs
Position
Unknown
AA seq
746 aa
AA seq
DB search
MRVVMVTSPCSPSPLLWLVQILLWFHNHGPQLTEAGPACPNPCTCSNQASRVICTRKSLE
QVPESISENTRYLNLQENTIQVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTVVPSQAFEYLSKLRELWLRNNPIETLPAFAFHRVPSLRRLDLGELRKLDFI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGIVRPGSFQGLVSLRKL
WLMHSRVSVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPGIKGKYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWFTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSASDPSNAYSYFTTVTVETVDTVRDREENSARQDVNMTFIEFPNP
TGRRGVLEGRPGITIPPSLSSLSSLSPRANKGPDNTVTVSIMDVTNIPGLDDVMKTTKII
IGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIVNVEDEIGAGAGSGISGGSTM
NSGSGEGTLRIHHHPEIVNLPNIGRSDTLNHYYKTHHFNNNVMGLSIGSDGMGQGMMINS
KNQQMHDIPISCTSVPISTANMLSSSGNGNNMNPCSMSPPLPMSLPMPTMGLHGSIKGFM
GQHQNPQMEPLLFKGNSKENVQETQI
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtcatggtgaccagcccctgttccccttcccccctcctctggttggtccag
attctgttgtggtttcacaaccatggaccccagctgacagaggcaggacccgcctgcccc
aacccttgtacgtgctccaatcaggcgagccgtgtcatctgtaccaggaagagtttagag
caagtcccggaaagtatttcagagaacacaagatacctcaatctacaagagaacactatt
caggtgatcaagtctgacacgtttaagcacctgcggcatctggaaatcctccagctttcg
aagaaccacatccggcagattgaggtgggagctttcaatggccttcccaacctcaacacg
ctggagctttttgacaaccgtctcacagtggtaccgtcacaagcctttgagtacctcagc
aagctaagggaattatggctacggaacaaccccatcgagacactgccggcctttgccttt
caccgtgttccctctttacgccgtctcgatctaggggaactcaggaaactggatttcatc
tcggaggcggccttcgaaggtctggtcaacttgcgcttcttgaatcttggcatgtgcggc
ttgaaggatatccctaacctcactccactagtgcgactggaggagttggagctgtcaggg
aaccagctggggatagtcaggcctggatccttccagggcctggtgtcacttcgcaagctg
tggcttatgcactccagagtgtcagtcattgaacgcaatgcctttgatgacctcaaaaac
ttggaggagctcaacctctcccacaattccctccattccctgccccatgacctcttcacc
cctttgcaccagttggagagggtacatctcaaccacaacccttgggtgtgcaactgcgat
gttctgtggctcagctggtggctgaaagagactgttcccagcaacaccacctgttgtgct
cgatgccatgcacccccaggtataaaaggcaaatacattggggaactagaccagagccac
ttcacctgctatgccccagtgattgtcgagccacccactgatcttaatgtcacagagggc
atggctgctgagctgaaatgtcgtacaggaacctcgatgacctctgtgaattggttcact
ccaaatggcaccctgatgacccacggatcgtaccgagtgaggatctcagtgcttcatgac
ggaacactgaacttcaccaacgtgaccgtgcaagacacggggcagtacacttgcatggtg
accaactccgccggaaacaccactgcaaccgctgtgctcaacgtgtctgcttcagacccc
agcaacgcctacagctatttcaccactgtcaccgtggaaacagtagatacagtgagagat
cgagaggagaactcggcaagacaggatgttaatatgaccttcatagaatttcctaatcct
acgggccgaagaggggtgttagagggccgaccaggaatcactataccgccttctctctcc
tctctttcctcactgtccccacgagccaacaaaggtcctgataatactgtgactgtgtca
ataatggatgtaactaatattccaggcttggatgatgtaatgaaaacaactaagatcatc
attggttgtttcgtcgcaattacctttatggcagctgtaatgttggtggtcttctacaaa
ctccggaagcagcaccagctacacaagcaccatggccccgcaagagccatagagattgtc
aatgtagaagatgagatcggagctggggccgggagcggcatctcagggggttcaacgatg
aattctggcagcggagaaggaaccctaaggatacaccatcatcctgaaatagtcaacctc
cccaacattggccgtagtgatactctcaaccattactacaagacccatcatttcaacaac
aacgtgatgggtctcagcattggctccgacgggatgggacaaggaatgatgatcaatagc
aagaaccagcaaatgcacgatatccccatctcctgtacctcagtcccaatctctaccgct
aatatgctcagctcatcaggaaatggcaacaacatgaacccttgttctatgtctccaccg
ctgccgatgtctctccccatgcctaccatgggcttacatggatcgatcaagggtttcatg
ggccaacaccagaatccccaaatggagcctctcctcttcaaggggaactcaaaggaaaat
gtccaagagactcagatctaa
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