Notothenia coriiceps (black rockcod): 104964479
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Entry
104964479 CDS
T04920
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
KO
K18994
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 [EC:
5.6.2.6
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104964479
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104964479
Spliceosome [BR:
ncc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104964479
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDRF1_N
HA2_C
HA2_N
RAI1
Motif
Other DBs
NCBI-GeneID:
104964479
NCBI-ProteinID:
XP_010791580
UniProt:
A0A6I9PUT2
LinkDB
All DBs
Position
Unknown
AA seq
1026 aa
AA seq
DB search
MEQDITGLTGEEYTERISPCCSDSETLSQRDTENDDILELNQFDGLPYSSRFYKLLRERK
ELPVWDAKCEFMDTLAKGRFVIVSGSAKTGRSSQIPQWCAEFCLSVQFQHGMVVCTQIHA
QQAVDLALRVADEMDVNIGHEVGYSIPLEACSHNDSVLRYCTDDMLLREMMSDPLLERYG
VIVVDQAHQRTVATDVLQGLLKDVALQRPELRVVLLTAVDPDPKQLVHFNGSAAPLIRLQ
SPGAGAGVHSSTGDGYFCSALRLVLEIHRSEEEGDVVVFLVTTQEIDLAHDILCHEGQSV
PPELGDLLPVAVHPGRPGNLPLLEEGGAARTRRVFLTSSPNEDFFWAVGSINFVIDAGLE
KRNVYNPRIRTNSVLIQPISTGQAESRKQLTGPKGKCFCLYPKDRQLPVQIRPRVVESDI
TSTVLFLKRMEIAGLSHCDFIDRPDPGGLMQALEELDYLAALDDDGNLSAMGIIMSEFPL
EPQMAKTLLASCEFDCFSEVVIIAAMLTAPTCFIVPSADMKPEATQSHMKFQHPEGDHFT
LINIYKAFKQSQQNPCCNEEKWCQDSFLSHAALLAADALCSELTDTLKRIELPTSLPAFG
SRSNTFSIKRALLAGFFMQVRKHNFNKQTLQVDNNKPINILTGIDYWLDNLMCNVPELVM
CFHVNGIVQKYEMIKTEDIPHLENSTFSTRVVKDIAQNILSFLKSNCTKEGHTYWLFKAS
GSDIVKLYDLTTLCEEAEEEKCQNPFTLPVAVLLYRVASNMMLKASQNRKHYGTIRTLLL
NCVKLLDEERHPQIIASAHYMLSELFQLDEPPEEDGEESIRAGGSEDSYSDEDREEEEEL
TEDSDENVSYRSCCSPQDDSKAVAVIRSVVELSVPEKYKSTHQIRPSSVFPVSLDKEEKC
RHVLSCVLKGLKAVDVTIKKESDLPAADPNTPIPLKYEDRNAIGACAAEQGLSLLLERAM
AWQADQKLPTRSGMIPGSWQHRMKLQLFLKASKAYYVLSDAATKLQKYGRALRYIKLSLQ
CYGEVI
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggacattaccggtttaactggagaagagtataccgagaggatatcaccctgt
tgttcagattcagagactctgagtcaacgagacactgaaaatgatgatattttggagctt
aatcagtttgatggactgccttattcctccaggttttacaaattgctgagggaaaggaaa
gagctgccagtgtgggatgcaaaatgtgaatttatggacactttggccaaaggacggttt
gtcattgtcagtggctctgccaaaactggaagaagttctcaaatcccccagtggtgtgct
gaattctgcctgtcagttcagttccagcatggcatggtggtttgtacgcagattcacgcg
cagcaggctgtagatctcgccctgagagtggcagatgagatggacgtcaacattggtcat
gaggtcggatacagcatccctttggaagcatgttcccacaatgactcggtcctaaggtac
tgcactgacgacatgctcctgagagagatgatgtcggaccctctgctcgagcgttacgga
gttatcgtggtggaccaggcccaccagaggaccgtggccaccgacgtgctgcagggtctt
ctgaaggacgtggccctgcagaggcctgagctccgggttgtcctactcacagctgtggac
cccgacccaaagcagctggtccatttcaacgggtcagcagcgcctctgatccgcctgcag
agcccgggcgcaggggcgggggtgcacagcagcacgggggacggatacttctgctccgct
ctccgcctggtgctggagatccaccgctcagaggaggaaggagacgtggttgtgtttctg
gtgacgacacaggagatagatctggcccatgacatcctgtgccatgaggggcagagtgta
ccccctgagctgggggacctcctgcccgtcgctgtgcaccctggtcgccctgggaaccta
ccgctcctggaggaggggggggcagcccggacccgcagggtgttcctcacatccagccca
aacgaggacttcttctgggccgtgggctccataaactttgtcattgatgccgggctggag
aaaagaaatgtttacaaccccaggatcagaactaactcagtcctcattcagccaatcagc
acgggtcaagccgagagtcgcaaacagctgacaggtcccaaaggcaagtgtttctgcctg
tacccgaaggacagacagcttcctgtgcagattcgcccccgcgtggtggagtctgacatc
acgtccacggtgctcttcctgaagaggatggagatcgctggactgagtcactgcgacttc
atcgacaggccggaccccggaggcctcatgcaggctttggaggagctggactaccttgca
gctctggatgatgacggaaacctctcagcgatgggcatcatcatgtctgagttccccctg
gagccgcagatggccaaaactctgctggcctcctgtgagttcgactgcttcagcgaggtg
gtcatcatcgctgccatgctaacagcaccaacttgcttcatagttccctctgcggacatg
aagccagaggcgactcagagccacatgaagttccagcacccggagggagaccacttcacc
ctcatcaacatctacaaggccttcaaacaaagccagcagaacccatgctgtaatgaggag
aagtggtgtcaggattccttcctgagccacgccgctctgctggcagcggacgctctttgc
tctgagctcacggacactctgaagaggatcgagctgcccacctcactgcccgccttcggc
tcccgcagcaacaccttcagcatcaagagagccctgctggcaggcttcttcatgcaggtc
aggaaacacaactttaataaacagacccttcaggtggacaacaacaaaccgatcaacatc
ctgacgggtatcgactactggctcgacaatctgatgtgtaatgtccccgagctcgtcatg
tgctttcacgtcaacggcattgtacagaaatacgagatgataaaaaccgaggacatccct
catctggagaactcgaccttctccacgagggtggtgaaagacatcgcccaaaacatcctc
tccttcctgaagtccaactgcaccaaagagggtcacacctactggctgttcaaagccagt
gggagtgacattgtgaagctttatgatcttactactctgtgtgaggaggcggaagaagag
aaatgtcagaatcccttcactcttcctgtggctgtgcttttataccgagttgccagtaac
atgatgctgaaggcgagtcaaaacagaaagcactacggcacaatcagaactctgctcctg
aactgcgtcaaactgctggatgaggagaggcacccacagatcatcgcctcggctcactac
atgctgtcagagctgttccagctggacgagcctccggaggaagatggagaggagtcgatt
cgggccggcggctcagaggacagctacagcgacgaagacagagaggaagaggaggagctg
acggaggacagtgacgagaacgtgtcctaccgctcctgctgcagcccgcaggacgacagc
aaggctgtggctgtgatccgctccgtggtggagctgtccgtccccgagaaatacaaatcc
actcaccagatcaggccaagcagtgttttccctgtttctctagacaaggaggagaaatgc
agacatgtcctgagctgcgtgctaaaggggctgaaggcggtggatgtcaccatcaagaag
gagagcgatcttcccgctgcagaccccaacacgcccattcctcttaaatacgaggacaga
aatgcaatcggagcctgtgctgccgagcaaggcctctctcttcttcttgagagagcgatg
gcgtggcaggcggaccagaagctcccgacgcgctccgggatgatccccggctcctggcag
caccgcatgaagctgcagctcttcctcaaagcctccaaagcgtactacgtcctgtcggat
gctgccaccaagctgcagaagtacgggcgagctctgcgctacatcaagctttccctgcag
tgttacggtgaggttatttaa
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