Notothenia coriiceps (black rockcod): 104964700
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Entry
104964700 CDS
T04920
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104964700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncc03021
]
104964700
03036 Chromosome and associated proteins [BR:
ncc03036
]
104964700
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104964700
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104964700
PBAF complex
104964700
GBAF(ncBAF) complex
104964700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
104964700
NCBI-ProteinID:
XP_010791851
UniProt:
A0A6I9Q2L4
LinkDB
All DBs
Position
Unknown
AA seq
955 aa
AA seq
DB search
MATMSGATNLGIPGARLASSGTSAHRKKDSSPSARFWESPETLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQATSPVLTKLPAKSFLDLRPAGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFGAIGISLIQNNGMSLPVVYVDPTLDQELVSRLTD
VIAKHQGTLTEDRTLASHHIYPSPASKEEERLMHKQTQCXPFLSFLLLLYSYDSWLSSSD
VEGEVEEPPHSEKPWRVHAGWVLDTDVFNEWMNEEDYCVNERNVAIILRRRIHLRDEQDS
KHTPSKKRRRSISPPSEGRKKGKKGRRRGPQEEEPEEDLTKDMEDPTPVPNMEEVILPKN
VNLKKDSENIPVKGGTMADLDELEEDFPGREDEEGRGDTHRLSEGEDNTTEQTHHIIIPS
YTSWFNNNSVHSIEKRSLPEFFHGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSCRR
ILTGDVCSVIRVHSLLEQWGLINYQVDAESKPLPMGPPPTPHFNVLIDTPSGLAPLQHKP
LQVSASQNMLFFQEKSREKPLECQNFGLRSDIYTKKIPKTKGVSGREWTEQETLLLLEAL
EVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSAASLGPLAYQPVPFSQSENPV
MSTVAFLASVVDPRVASSAAKAALEEFSKVHEESLDKISEASNQPDKTESMEVEKIETNS
TPLQISQVPLRADGLKVEPSVANVTGELVKSENAENILAEEGDGVRVDDDESFDQADVDE
GRLLEQDLVDGSVVTAAAAALSSAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRH
FEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEIKVRQQREQQAQPGYTVQPTAV
PPASAQSMPNRMIPGGVNAQTMAPRHPGAPNGMYPSSQPDGIAPAQPGPPAASHN
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggagcaacaaacctcggcattcccggggcaagactagccagctcc
ggaacttccgcacaccgtaaaaaagacagcagtccgtccgctaggttctgggagagtccg
gagactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgccccttcgtgtcaggctctggctgcagtcaccctgcagctcctccag
ttccaagaggatgcgtttggcagacaagcgaccagccctgttctcaccaaactgcctgca
aaaagcttcctggacctgcgaccagcgggtggactctgccacattcttggcactgcctac
aagtttaaggcagagcaaggctggcgtaggtttgacttgcagaatccatcaagaactgaa
aggaatgttgagatgtttggtgccattggaatatcactgatccagaacaatggtatgtca
ctgcctgtggtgtatgtggaccctacgctggaccaggagctggttagcagacttacagat
gtgatcgccaaacaccagggtacgctcactgaggaccgaacgctcgccagtcaccacatc
tacccctcacctgcttctaaagaggaagagaggcttatgcacaagcaaacacaatgctaa
ccctttttgtctttcttgctactcttatacagttatgacagttggctgtcctcaagtgat
gttgaaggagaggttgaagagccaccacattcagaaaagccgtggcgggtccatgctggc
tgggttctggacacggatgttttcaacgagtggatgaacgaagaagactattgtgtgaat
gagaggaatgtagctatcattctccgccggcgtattcacctcagagacgagcaggactcc
aaacacaccccttcaaaaaagagaagacgctccatctctcctccctctgaaggcaggaag
aagggaaagaaagggcgaaggcgtggaccacaggaggaagagccagaagaagacttgacc
aaagacatggaggaccctacccctgtccctaacatggaggaagttattttacccaagaat
gtcaacctgaagaaggacagtgagaatattcctgtcaaaggagggaccatggctgacctg
gatgaactggaggaggatttcccaggaagggaagatgaggagggaagaggggatacacat
cggctttcagaaggagaagacaacaccacagaacaaacacatcacatcataataccgagc
tacacgtcttggttcaataacaacagcgttcactcgatagagaaacgttcgttgcctgaa
ttcttccatggaaagaacaagtcaaaatcaccagaaatctacctggcataccgtaacttc
atgatcgacacataccggctcaacccccaggaatacctcagctcaacgtcctgcagacgc
atcctcactggagacgtctgctctgtcataagggttcattcacttttggagcagtggggt
ttgattaactaccaggtggatgcagagagcaaacccctgcccatgggacccccacccacc
cctcatttcaatgtattgattgacacaccgtccgggctggccccacttcaacacaaaccc
ctgcaggtgtcagcctcgcagaacatgttgtttttccaggaaaagagcagagagaagcct
ttagaatgccagaactttggtctgcgctccgacatctacaccaagaaaatccctaagact
aaaggagtatcaggaagagaatggacggagcaagagacgctcttgctgttagaggcctta
gaggtgtacagagatgactggaacaaagtatctgagcatgtgggctccagaacgcaggat
gagtgtattctccacttcctccgcctgccgatagaagacccttacttagaagactccgcg
gcttccctcggcccactggcgtaccagcccgtgcctttcagccaatcagaaaaccccgtc
atgagcaccgtggccttcctggcctctgtggtggaccctcgggtggcatcatctgcagct
aaggccgcactggaggagttttccaaagtgcacgaggagtcgctggataagatctctgaa
gcgtccaaccagcctgacaaaacagaatcaatggaagtagagaaaattgaaacaaactcc
accccccttcagatctcccaggttcctttaagggcagatgggctcaaagtggaacccagt
gtggccaatgtgacgggagaactagtcaaaagcgaaaatgctgaaaatatacttgcagag
gagggagacggagtaagggtagatgatgatgagagctttgatcaggcagacgtggatgag
gggaggttgttggagcaggatctggtggatggcagcgttgtcacggcagcagctgctgct
ctttcctccgctgccacaaaggccaagcacctggcagcagtagaagagaggaagatcaag
tccctggtggctctgctggtggagacccagatgaagaagctggagatcaagctgagacac
tttgaggagctggagaccatcatggaccgagagaaagaggctctggagcagcagcggcag
cagctcctctctgagagacagactttccacaccgagcagctcaaacaggcagagatcaag
gttcgccagcagagggagcagcaggcgcagccgggatacaccgtgcagccaacagctgtg
cctcctgcttcagctcagtccatgcccaacaggatgattcctggtggagtaaacgcccag
acaatggctcctcgacatcctggagctcccaatggcatgtacccgtcctctcagcctgat
gggatagcaccagctcagccgggccctccagcagccagtcacaactga
DBGET
integrated database retrieval system
