Notothenia coriiceps (black rockcod): 104964757
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Entry
104964757 CDS
T04920
Symbol
ercc2
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03022
Basal transcription factors
ncc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104964757 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
104964757 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncc03021
]
104964757 (ercc2)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104964757 (ercc2)
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104964757 (ercc2)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104964757 (ercc2)
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104964757 (ercc2)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
104964757 (ercc2)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104964757 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
104964757
NCBI-ProteinID:
XP_010791919
UniProt:
A0A6I9PLE8
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEYYSKQTGESNNFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHTLTASYIRAQRHSDSSVPVCRFYEDFDAVGRQVPLPAGIYNLDDL
KDFGRRKGWCPYYLARYSLLHANIVVYSYHYLLDPKIADLVSKELSKNSVVVFDEAHNID
NVCIDSMSVNISRRTLDRCQANVDTLQNTIQNIKETDANKLNMEYRRLVEGLKEANVARE
TDVYLANPVLPDEILQEAVPGSIRTAEHFVRFLKRFLEYLKSRLRVHHVVQESTPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAITLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPKILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQVRENDFLTFDAMRHA
AQCVGRVIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHITDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLKKISQIAHQS
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgatggtctgttggtgtattttccatatgactacatatatcctgag
cagtactcttacatgctggagctgaagaggactttggatgctaagggtcatggagtcctg
gagatgccttcagggacagggaagactatctctctgctgtctctcattgttgcctaccaa
aaggcctttcctttggaagtgaccaagctgatatactgctccaggactgttccagagatt
gaaaaggtcgtggaggagctgcggaagttgatggagtattattccaagcaaactggtgaa
agcaacaacttcctggctctggccctctcctccagaaagaacctgtgtatccaccctgag
gtgagtgctctgcgcttcggcaaagaggttgatgggaagtgccacaccctgacagcctcg
tatatccgtgcccaacgccacagcgactccagcgtgcctgtgtgccgcttctacgaggac
tttgatgccgtcggccgacaggtgcctcttcctgcaggcatctacaacctggacgacctg
aaggactttgggaggaggaaaggatggtgtccttattatctggcacgctactcgctcctg
cacgctaacatcgtggtgtacagctaccactacctgctggacccgaagatcgctgacctg
gtgtccaaagagctgtccaagaactctgtggttgtgtttgatgaggctcacaacatagac
aatgtgtgcatagactccatgagtgtgaacatctccagacggactctggaccgctgccag
gccaatgtggacactttgcagaacaccatccagaatataaaggagacagacgctaataaa
ttgaacatggagtacaggcggctggtggaagggctgaaagaagccaatgttgccagggaa
acggacgtctacctcgccaatcctgtgttaccagatgaaatcctacaagaggccgtccct
gggtctatccgcacagcagagcactttgtccgtttcctaaaacgttttctggagtatctg
aagtcccgtctcagggtccatcatgtggtgcaggagagcaccccgcagttcctcaaagac
atcttcgacaaagtctgcatcgaccgcaagcccctcaggttctgtgcagagcggttacag
tcgctgctccggaccctggagatcgcagacatcgcagacttctcagctattactctcatc
tccaactttgctaccctagtcagcacctacagccaaggtttcaccatcatcattgagccc
tttgaagacagaactcccaccatcgctaaccccgtgctgcacttcagctgtatggacccg
tctatcgccatcaaaccagtgttccagaggtttcagtcggtcatcatcacctctgggact
ctctctcctctggacatctatcccaaaatcctcgacttccgccctgttaccatggcatcc
ttcaccatgacactggccaggacctgcctctgtcctctgattgttggcagggggaacgat
caggtggccctgagctcaaagtttgagaccagagaagacttcgctgtgattcgtaactat
ggcaacctactccttgagatgtctgcggtcgttcccgatggcatcgtggcatttttcacc
agctacgtctacatggagaatatcgtggcgtcgtggtatgaacaggggatcctggagaac
atccagaggaacaagctgatcttcatcgagactccggacgctgcagagaccagcatggct
ctggaaaaataccaggaggcctgtgagaacggcagaggagccatcctgctgtctgtggcc
agaggaaaggtgtctgagggaatagactttgtgcaccattttgggcgtgcagtcatcatg
ttcggggtgccgtatgtttacacacagagccgcatcctgaaggcccggcttgagtacctc
cgggatcaattccaggtcagagagaatgacttcctgacgttcgatgccatgcgtcacgca
gcccagtgtgtgggccgagtcatcagaggcaagaccgactacggactcatgatctttgct
gacaagcggtacgcacgagcagacaaacgtgggaagctgcctcgctggatccaggagcac
atcaccgacggcagtctgaacctcactgtggacgaggccgtgcagctctccaaacacttc
ctgaggcagatggcccagccgttcagacaggaggaccagctgggtctctctctgctgact
ctggagcagctggagtctgaggagatgctgaaaaagatcagtcagatcgctcatcagagc
tga
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