Notothenia coriiceps (black rockcod): 104966698
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Entry
104966698 CDS
T04920
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03015
mRNA surveillance pathway
ncc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104966698 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
104966698 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104966698 (pabpc1)
03041 Spliceosome [BR:
ncc03041
]
104966698 (pabpc1)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104966698 (pabpc1)
mRNA cycle factors
Stress granule specific factors
104966698 (pabpc1)
Spliceosome [BR:
ncc03041
]
Complex C
Other components
Complex C specific factors
104966698 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
HTH_58
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
104966698
NCBI-ProteinID:
XP_010794231
UniProt:
A0A6I9Q4M8
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYVKNFGEDMDEEKLRDVFSKYGQAMSIRVMTDESGKSRGFGFVSFDR
HEDAQQAVDEMNGKEYNGKLIYVGRAQKKMERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFTPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPAAGQMAQIRPSPRWATQGVRPQHFQNMPGAMRPSAPRPQTFGAMRPSSQMPRMMST
QRVAQPMGPRPAAAAAVPVRGVPQYKYAPGVRNPQQHMPAQQQVAMQQPAVHVQGQEPLT
ASMLAAAPPQEQKQMLGERLFPMIQNMHLGLAGKITGMLLEIDNSELLHMLESPESLRSK
VDEAVAVLQAHQAKEATQKPVPTPAGVATA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagctaccccatggcatccctgtatgtcggggatctgcaccaa
gatgtgaccgaggccatgctgtacgagaaatttagcccagccggagctatcctatccatc
agggtctgcagggacatgataacccggcggtcccttggatacgcctatgtcaacttccaa
cagccagcggacgccgagcgtgcactggacaccatgaactttgacgtgatcaaggggcgg
cctgtgcgcatcatgtggtcgcagcgcgatccgtcactgagaaagagcggcgtgggaaac
atcttcatcaagaatcttgacaagtctatcgataacaaggctctatacgacaccttctct
gctttcggcaacatcttgtcatgcaaggtggtttgtgacgagaatggctctaaaggctac
gggtttgtgcattttgagactcaagaggcagctgaacgagccattgagaaaatgaatggc
atgctcctcaatgaccgaaaagtattcgtgggccgtttcaaatcccgcaaagagcgcgag
gccgagttgggtgcccgcgcaagggagtttacaaacgtctatgttaagaactttggtgaa
gacatggatgaggagaagctgagggacgtcttcagtaaatacgggcaagccatgagtatc
cgagtcatgacagatgagagcggaaaatctcgaggcttcgggtttgtcagttttgacagg
catgaggacgcccagcaggcggtggatgagatgaacgggaaagagtataatggcaagctc
atctacgttggccgtgcccagaaaaagatggagcgacagacagagctcaagcgcaagttc
gagcaaatgaaacaagaccgcatgactcgctaccagggtgtcaatctgtacgtgaagaac
cttgatgatggacttgacgatgaacgtctgcgaaaggagttcacaccgtttggcacaata
accagtgccaaggtcatgatggaaggcggacgcagcaaaggtttcggctttgtctgcttc
tcgtccccggaggaggccaccaaagcggtgacagaaatgaatggacgcattgtagccacc
aagccattgtatgttgccctggcacagcggaaagaggagcgtcaagctcacctgaccaac
cagtacatgcagcgcatggccactgtgcgcgcagtgccaaacccagtcatcaatccctac
cagccagccccgccgtctggctatttcatggcagccataccgcaggcccagaaccgtgct
gcttactacccagctgctgggcagatggcccagatccgcccgagcccccgctgggccaca
caaggggtccggccacaacatttccagaacatgccaggtgcgatgcgtccctcagcacca
cgccctcagaccttcggtgccatgcggccgtcctcccagatgccccgcatgatgtccacc
cagcgtgttgctcagcccatgggcccccggccagctgctgcagccgcagttcctgtgcgc
ggagtccctcagtacaaatatgccccaggagtccgcaatccccagcagcacatgcctgcg
cagcaacaagttgccatgcagcagcctgctgtccatgttcagggacaggagcctctgaca
gcctccatgctggctgccgctcccccgcaggagcagaagcagatgctgggtgagcgtctg
ttcccaatgatccagaacatgcaccttggtttggccgggaagatcaccggcatgttgctg
gaaattgacaactcagagctgctccacatgttggagtccccagagtctctccgctcaaag
gtggatgaggcggtggctgtgcttcaggcccaccaggctaaggaagccacccagaagcct
gtgccaaccccggctggagtcgctactgcctaa
DBGET
integrated database retrieval system
