Notothenia coriiceps (black rockcod): 104966717
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Entry
104966717 CDS
T04920
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104966717 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104966717 (prpf8)
Spliceosome [BR:
ncc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104966717 (prpf8)
Complex C
U5 SnRNP specific factors
104966717 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104966717
NCBI-ProteinID:
XP_010794252
UniProt:
A0A6I9Q0A4
LinkDB
All DBs
Position
Unknown
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPGGMPPGVPPPIPVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDNEEDSPVAEWLYDHQPLKDANKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHYVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPLLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPMEFYHEVHRPSHFLNFASLQEGEVYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaccttcccctacagaggggtccctggagggatgccaccgggtgttccccct
cccatacctgtcccggactacatgtctgaggaaaagcttcaggagaaagcaagaaaatgg
cagcacttgcaggcaaagcgctactcagaaaagagaaagtttggctttgtggatgcccag
aaggaagacatgccacctgagcatgtccgcaagatcatcagggaccatggagacatgacc
aacagaaagtttcgccatgacaagagggtgtacctcggtgccctcaagtacatgccccat
gcagtgctgaagctgctggaaaacatgcctatgccctgggaacagatcagagacgtgcct
gtcctctaccacattaccggagctatttcttttgtgaatgaaatcccttgggtcatagag
ccggtctacatcgcacagtggggcactatgtggatcatgatgcgacgtgagaagcgtgat
cgtcgtcacttcaagcggatgcgatttcctccatttgatgatgaggagccgccgctggat
tatgcagacaacatccttgatgtggaaccactggaggcgatccagatggagctggacaat
gaggaggactctcctgttgcagagtggctctatgatcaccaacccctcaaagacgcaaac
aagtttgtgaatggcaccacctaccgtcgctggcagttcacactgcctatgatgtccaca
ctgtaccgcctggccaatcagctgctcacagacctggtggatttcaactacttctatctg
tttgacctcaaggccttcttcacttccaaggccttgaatatggccatccctggaggacca
aagtttgagccacttgtcagagacatcaaccttcaggatgaagactggaatgagttcaat
gacatcaacaagatcatcatccgacagcctatcaggacagagtacaaaatcgctttcccc
tacttgtacaacaacttgccgcactatgtccacctaacctggtatcatacacccaacgtg
gtgttcatcaagacggaggatccagatctcccagcgttctacttcgacccgctgatcaac
cctatttcccacagacactctgtcaagagtcaggagcctctgcctgatgatgacgaggag
tttgagcttcctgagtatgtggagcccctcctcaaggagaccccactctacacagacaac
acagccaatggcatcgctctgctgtgggcaccgagacccttcaacctcagatctggtcgc
acaaggcgtgccattgatatccccctgatcaagaactggtatcgtgagcactgccctgca
ggacagccagtgaaagtgcgtgtgtcctaccagaaacttctcaagtactatgtgctcaat
gctctcaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttcttccagtccaccaagctggactgggtggaggtcggtctgcaggtctgt
cgtcagggttacaacatgctcaatctgcttatccatcgtaagaacctcaactacctgcat
ctggattacaacttcaacctgaagccggtcaagacactgaccacaaaggaaagaaagaag
tcccgattcggaaatgctttccacctgtgcagagaggtgctgcgcctcagcaagctggtg
gtggacagccacgtgcagtacaggctgggaaatgttgacgccttccagttgtccgatggt
ctgcagtacatcttcgcccacgttggtcagctgactggcatgtaccgttacaagtacaag
ttgatgagacaaatccggatgtgcaaagatctgaagcatctcatttactaccggttcaac
actggtcctgttggcaagggcccaggttgtggcttctgggctccaggctggagggtgtgg
ctgttcttcatgagagggatcactccgctgttggagaggtggctgggaaatctgctcgcc
aggcagttcgaaggacgtcactccaagggcgtagccaagactgtgaccaaacagcgcgtg
gagtctcactttgacctggagctgcgtgccgccgtgatgcatgacatcctggacatgatg
cctgagggcatcaaacagaacaaagccagaaccatcctgcaacacctcagtgaatcctgg
aggtgctggaaggccaacatcccctggaaggtgcccggcctgcccactcccattgagaac
atgatcctgcgctacgtgaaggctaaagctgactggtggaccaacactgctcactacaac
cgtgagcgaatccgccgtggagccactgtggataagacggtgtgcaagaagaacctgggg
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggcccctacatcacagctgaagaggcggtggccatttacaccaccactgttcattggctg
gagagtcggcggttctcccccatccctttccctcccctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaggaagcatacagtgtgaagtcccgtctgaac
cagagtcagagggaggagctgggtctgattgagcaggcttacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacttgctcacccagagagccttcaaagaggttggtattgag
ttcatggacttgtacagtcacctggtgcctgtgtatgatgtcgagcccctggagaagatc
acagatgcctacctcgaccagtacctgtggtacgaggcagacaagaggcgtctgttccca
ccctggatcaaacctgctgacactgaacccccaccactgctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagacggcggagggagagtgcaacgtgatgctg
gagtcccgctacgagaagatgtacgagaagatcgatctgaccctgctcaacaggctgctg
cgtctcattgttgaccacaacatcgctgattacatgacagccaagaacaacgtggtcatc
aactacaaggacatgaaccacacaaactcctacggcatcatcagagggctgcagtttgcc
tcattcattgtgcagtactacggcctggtgatggacctgctggtcctgggtctgcaccgt
gccagtgagatggctggcccgcctcagatgcccaatgacttcctcagtttccaagacacg
cccacggagagcgcccacccaatccgactgtactgccgttacatcgaccgcatccacatc
ttcttcaggttctctgctgatgaggccagggatctgattcagaggtacctgacggagcat
ccagaccccaacaatgagaacatcgtgggttataacaacaagaagtgctggccccgcgat
gcccgcatgagactgatgaagcatgacgtcaacctgggacgtgctgttttctgggacatc
aagaaccgcctgcccagatccgtcaccacggtgcagtgggagaacagctttgtttccgtc
tacagcaaagacaaccccaacctgctcttcaacatgtgcgggtttgagtgccgtatcttg
ccaaagtgccgcaccagctacgaggagttcactcacaaggacggtgtgtggaacctgcag
aacgaggtcaccaaagagaggaccgcacagtgtttcctgcgcgtggatgacgaatcaatg
cagcgtttccacaacagagtgcggcagatcctgatggcctctggatccaccacattcacc
aagattgtgaacaaatggaacacggctctgattggtctgatgacgtacttccgcgaggct
gtggtcaacacccaggagctcctggacctgctggtgaagtgcgagaacaagatccagact
cgtatcaagatcggcctgaactccaaaatgcctagccgcttccctcctgtcgtcttctac
acccccaaagagctgggtgggcttggcatgctgtccatgggccacgtgcttattcctcag
tcagacctgcggtggtccaagcagacagacgtgggtattacccatttcaggtctggaatg
agccacgaagaggaccagctgattcctaacctgtatcggtacattcagccatgggagagc
gagttcatcgactctcagcgggtttgggccgagtacgctctcaagaggcaggaggccatc
gcccagaacaggcgtctgaccctggaggatctggaggactcatgggacagaggcatccct
cgtatcaacacacttttccagaaggacagacacacactggcctatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtactgaagcagaatccgttctggtggacccac
cagaggcacgatggcaaactgtggaacctgaacaactaccgcacagacatgatccaggct
ctgggcggagtggagggcatcctggaacacacactctttaagggaacttactttcccacc
tgggagggtctcttctgggaaaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaatgcccagaggtctggtttgaaccaaatccccaaccgtcgcttcacactttgg
tggtcccccaccatcaacagagccaacgtgtacgtaggtttccaggtacaacttgatctg
acaggaatcttcatgcacggcaagatccccactctgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcatgagagcgtcgtcatggatctctgtcaggtgttt
gatcaggagctggatgctcttgagattgagacggtgcagaaggagaccatccatcccagg
aagtcatacaagatgaactcctcctgtgcagacatcctgctctttgcatcatacaagtgg
aacgtctctcggccatctctgcttgctgactcaaaggacgtgatggacagcaccaccaca
cagaagtactggatcgacatccagctgcgctggggtgactatgactctcatgacatcgag
cgctacgccagggccaagttcctggactacaccacggacaacatgagtatctacccctcc
cccactggagtgctcatcgctatcgacctggcttacaacctccacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
ccggccctgtatgtgctcagagagcgcatccgcaagggtctgcagctgtactcctccgag
cccactgagccctacctgtcctctcagaactacggagaactcttctccaaccagatcatc
tggtttgtggacgacaccaacgtgtaccgagtcaccatccacaagacctttgagggtaac
ttgaccacaaagcccatcaacggagctattttcatcttcaaccccaggactggtcagctc
ttcctcaagatcattcacacctcagtgtgggctggacagaagcgtctgggacagctggcc
aaatggaagacagctgaagaagtggctgctctgattcgttccctccccgtggaagagcag
cccaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctc
gacttccccaacatcgtgatcaaaggttctgagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagatctgatcctgaaggcgaccgagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcctacacagccttctcccgacttatc
ctgatcctcagagcgctgcacgtcaacaatgaccgcgccaaggtgatcctgaagcctgac
aagaccaccatcaccgagcctcatcacatctggcccacgctcaccgacgaagaatggatc
aaggtggaggtgcaactcaaagatctcattctggcagattacggcaaaaagaacaatgtg
aacgtggcctcactgacacagtctgagatccgtgacatcatcctgggtatggagatctct
gctccctcacagcagcgccagcagattgccgagattgagaagcaaaccaaagagcagtcg
cagctcacagccacgcagacccgcactgtcaacaagcacggtgacgagatcatcacatcc
accacctccaactatgagacccagaccttctcatcgaagaccgaatggagagtcagagcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcatctgacgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagatttgcgtgcacagattgcaggctacctgtatggcacgagtccaccagataacccc
caggtgaaggagatccgttgtatcgtcatggtgccacagtgggggactcaccagactgtt
cacctgcccaaccagctgccgggtcatgaataccttaaagaaatggagccactcggatgg
atccatacccagcccaatgagtcgccccagctgtccccacaggacgtcaccacgcatgcc
aaggtcatggctgacaacccctcatgggacggagagaaaaccatcatcatcacctgcagc
ttcacaccaggctcgtgcacgctcacagcctacaagctgacacccagtggttatgagtgg
ggtcggcagaacacagacaagggaaacaaccctaaaggctacctgccctcccactatgag
agagtgcagatgctgctctctgaccgcttcctgggcttcttcatggtgcctggccaggtc
tcctggaactacaacttcatgggtgttcgccatgaccccaacatgaagtacgacctgcag
ctggccaaccccatggagttctaccatgaagtccaccggccctcgcacttcctaaacttt
gcctcgctgcaggagggcgaggtctataacgcagaccgtgaggacatgtacgcctga
DBGET
integrated database retrieval system
