Notothenia coriiceps (black rockcod): 104966914 Help Entry 104966914         CDS       T04920                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04510   Focal adhesion ncc04512   ECM-receptor interaction ncc04518   Integrin signaling Brite KEGG Orthology (KO) [BR:ncc00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104966914    04518 Integrin signaling     104966914  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104966914  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ncc00536]     104966914 Glycosaminoglycan binding proteins [BR:ncc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104966914 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  104966914 NCBI-ProteinID:  XP_010794561 UniProt:  A0A6I9Q4U4 LinkDB All DBs Position Unknown AA seq 1490 aa AA seqDB search MFRIMDSRTVLLLVATQACLLAVVRCQEEDQEDVLSCLQDGQRYSDKDVWKPEPCRICVC DTGTVLCDEIVCEDLKDCPKPEIPFGECCPICAPDHSPPIGSPGVKGQKGEPGDITDVVG PRGPGGPMGPSGEQGKRGSRGDSGEKGTPGPRGRDGEPGTPGNPGPPGPAGPNGPPGLGG NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG PLGPRGPSGPSGKPGDDGDAGKPGKSGERGPSGPQGSRGFPGTPGLPGIKGHRGYPGLDG SKGETGAVGSKGESGSSGENGAPGPMGPRGLPGERGRPGPSGVAGTRGNDGLSGPAGPPG PVGPSGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPG SKGSAGAPGISGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPVG NQGPHGPQGEEGKRGPRGEAGSAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG ASGAKGAGGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGARG QPGVMGFPGPKGATGEPGKSGEKGLGGALGLRGLPGKDGETGAAGPPGPAGSAGERGEQG QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGASGATGPRGERGFPGERGAAGPQGLQG PRGLPGTPGTDGPKGAIGPAGTGGAQGPPGLQGMPGERGSAGIPGPKGDRGDLGEKGPEG ASGKDGGRGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFSG PPGSDGQPGIKGEMGESGQKGDAGAPGPQGPSGAPGPSGPTGVFGPKGARGAQGPSGATG FPGAAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDGGPPGRQGDAGLRGPAGTSGEKG DAGEDGPPGPHGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGSGDRG LPGPVGPPGLTGPSGEPGREGNSGSDGPPGRDGATGMKGERGTTGPAGAPGAPGATGATG PVGPTGKQGDRGESGAQGPAGSSGPAGARGMPGPQGPRGDKGESGENGERGQKGHRGFTG LQGLPGPPGQNGDQGATGVNGPSGQRGPPGPVGPSGKDGGNGMPGPIGPPGPRGRGGETG PSGPAGNTGPPGLPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGSLRTHDAEVDA TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNM ETGESCVKSKPDSIARKNWWSSKSKDRKHVWFGETMNGGSRFNYGDDSLAVNTAAIQMTF LRLLSTEASQSLTYHCKNSVAYLDASTGNLKKALLLQGSNDVEIRAEGNSRFTYIVMEDG CTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGSDQEFGVEVGAVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcagaataatggattccaggactgtactgctactcgtagccactcaagcctgtcta ttagctgttgtaagatgtcaagaagaggaccaggaggatgttttaagctgtttacaagat ggacagcgctatagtgacaaggacgtgtggaaaccagagccttgtcgcatctgtgtgtgt gacactggaaccgtcctgtgtgatgaaattgtctgcgaggatcttaaagactgccccaaa cctgaaatcccattcggagagtgttgccccatctgtgcacctgaccattctccacccatt ggatcaccaggagtcaagggtcagaaaggtgaacctggagacattacagatgttgtagga ccaagaggaccaggtggcccaatgggcccatcaggagagcaaggaaaacgaggatcaaga ggagatagcggggagaagggaacccctggtccccgcggcagagatggtgagcctggcacc cccggaaaccccggcccccctggacctgcagggcctaatggaccccctggacttggtgga aactttgctgctcagatggcaggtggatttgacgagaagtctggcggcgctcagatgggt gtgatgcaaggaccaatgggccccatgggacccagaggaccacctggccccagcggatca cctggcccacaaggtttccaaggcaacccaggggaggctggagagcctggacagtctggc cccctgggtccccgtggcccctccggaccttctggaaaacccggagatgatggtgacgct ggcaaacctggcaaatcaggtgaacgtggaccttctggacctcagggatctcgtggattc ccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgatggt tctaagggagaaactggagctgttgggtctaagggagagtctggttcttctggagagaat ggcgctcccggaccaatgggaccacgtggtctgcctggtgagagaggccgtcctggaccc agtggagttgctggtacacgtggaaatgatggcttgtccggtcctgctggccccccagga cccgttggcccctctggagctccaggcttccctggctctcctggtacaaagggagaagct ggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggcact cctggatcatccggaccatctggcgcttctggaaaccctggaactgatggtatccctgga tccaaaggatcagctggtgctcctggtatctctggtgctcctggtttccctggacctcgt ggaccccccgggcctcagggagcaactggacctctcggacccaaaggaacatctggagac cccggtattccaggcttcaagggagaggctggacccaaaggagaatttggacccgttggt aatcagggacctcacggcccacaaggagaagaaggcaagcgaggacccaggggtgaggca ggttctgctggaccacttggacctcctggagagagaggatctcccggtaaccgcggtttc cctggtcaggatggtctggctggtcccaagggtgcccctggtgagcgtggacccgctgga gcgagtggagccaagggagccggcggtgaccccgggcgccccggagagtctggtctcccc ggtgccagaggtctgactggacgccctggtgacgctggtcctcaaggcaaagttggacct tccggaggttctggtgaggacggtcgccccggaccccccggcccacagggagcccgcgga cagcctggagtcatgggattccccggacccaagggagcaactggcgagcctggcaagtct ggagagaaaggactgggtggagctcttggtctgagaggtctgcctggcaaagatggagaa actggcgctgctggaccccccggcccagctggctctgctggcgagagaggagaacaagga cagcccgggccctcaggtttccagggtcttcccggacctcctggcccccctggtgaggga ggcaagcccggagaccagggtgttcctggagaggctggagcttctggtgctactggaccc agaggagagcgtggtttccccggagagagaggagctgccggcccccagggtctgcagggg cctcgcggtctgcctggaactcctggaactgacggacccaagggagccattggacctgct ggtactggtggagctcagggcccccccggcctgcagggtatgcccggagagagaggatct gccggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaaggt gcttccggtaaagatggtggaagaggtctcactggtcccattggtcctcctggtccttcc ggccccaacggagagaagggagaatctggtcccgctggtccttctggggctcctggtacc cgtggtgctcctggtgacaggggtgagactggacctcctgggcctgctggattttccgga ccccctggctctgacggtcagcctggtatcaagggagagatgggagaatctggacagaag ggtgacgctggagcccccggaccccaaggaccctctggtgccccaggaccttcaggtcct accggtgttttcggacctaaaggtgctcgtggtgctcagggaccttctggtgccactggt ttccccggagctgctggccgagttggaccccctggtcccaacggtaatcctggagctgct ggacccgccggccctgctggtaaagacggacccaagggagtgagaggagacggtggacct ccaggccgacagggtgacgctgggctccgcggccctgctgggacatctggagagaaggga gatgctggagaagacggcccccctggtcctcatggtccttcaggtcctcagggtctgggc ggatcacgcggtatcgtgggtctgcccggacagcgtggagagagagggttccccggcctg cctggaccttctggtgagcccggaaagcagggagctgctggtggcagcggagaccgcgga ctccctggacctgtgggaccccctggcctcactggaccttcaggagagcctggcagagag ggcaactctggatctgatggacctcctggtagagacggtgctactggaatgaagggtgaa cgtggtaccactggtcctgctggagctccaggtgctccgggcgctactggtgccactggc ccagtcggccccaccggcaaacagggagaccgcggagagtctggtgcacaaggacctgct ggctcttcaggacctgctggagccagaggaatgccaggacctcaaggaccccgtggtgac aagggtgagtctggagagaacggtgagcgaggacagaagggacacagaggtttcactggt ctgcagggtctgcccggacctccgggtcaaaatggagaccagggagcgactggagttaat ggaccttctggacaaagaggaccacctggacctgtcggaccaagtggaaaggatggtgga aacggtatgccaggacccatcggaccccctggacctcgtggtcgcggtggagagaccggc ccctctggtcccgctggtaacactggaccccccggtcttcctggcccccccggccctggc atcgacatgtctgctttcgctggtctgggccagactgaaaagtcccccgatcctctcagg tacatgagggccgaccaggcttccggaagcctccgtacgcacgacgccgaggtcgacgcc actcttaaatctctcaacaaccagatcgagaacattcgcagccccgagggatccaggaag aacccggcccgcacctgcagagacctgaagctctgccaccccgactggaagagcggcgag tactggatcgatcccaatcagggatgcaccatcgacgccatcaaggtgttctgcaacatg gagacaggagagtcctgcgtcaagtccaagcccgacagcatcgcacgcaagaactggtgg tccagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggaggatcc cgcttcaactacggtgatgacagccttgcagtcaacactgctgccattcagatgaccttc ctgagactgctgtccaccgaggcgtctcagagcctcacctaccactgtaagaacagcgtg gcctacctggacgcctccacgggcaacctgaagaaggctttgctgctgcagggctccaac gacgtggagatcagagccgagggcaacagccgcttcacttacatcgtgatggaggacggc tgcacgaaacacacaggacagtggggcaagacagtgatcgagtacagatcgcagaagacc tctcgcctgcccattgtagacattgcccccatggatattggaggatcagaccaggagttt ggagtggaagtcggtgcagtctgcttcttgtaa

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