KEGG   Notothenia coriiceps (black rockcod): 104967410
Entry
104967410         CDS       T04920                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104967410 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ncc03041]
    104967410 (snrnp40)
Spliceosome [BR:ncc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104967410 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    104967410 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54
Other DBs
NCBI-GeneID: 104967410
NCBI-ProteinID: XP_010795153
UniProt: A0A6I9Q3F7
LinkDB
Position
Unknown
AA seq 347 aa
MIEPKKRPADMAMVPAAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGSTLASSGFDRLILMWNVYGDCDNYATMKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAATFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacccaagaagagaccggcggacatggcgatggttccagccgccgtgaagcga
ccccggacggagctggtggcggcggcgcagtcccagcaactcgtggccatgggtcctcca
cggtcctccagcctgcaggctcccattatgctgatgtctggtcacgagggcgaggtctac
tgctgcaagtttcaccccaacggatccacgctcgcctcctcgggatttgataggctcatt
ttgatgtggaatgtgtacggagattgtgacaattatgccacgatgaagggccacagtgga
gcagtgatggagctgcactacaacacagatggcagcatgctgttttcagcgagcacagac
aagactgtaggagtgtgggacagtgaaactggagagagaatcaagcgcctgaagggccac
acctccttcgttaacacctgttacccagcccgtcgagggccccaactcgtctgtaccggc
agtgatgacgggaccgtcaagctgtgggacatccgtaagaaaggggcaatccacactttc
cagaacacctaccaggtgctcgctgcaacattcaatgacaccagtgatcagatcctttca
ggaggcatcgacaatgacatcaaggtgtgggacctgaggcagaacaagctgatctacaat
atgcacggccacggtgactcagtgactggacttagcctgagctctgagggatcatacctt
ctctcaaactccatggataacacagtgcgtatttgggatgttcgaccatttgcacccaag
gagagatgtgtgaagattttccagggcaacgttcacaactttgagaagaatttgctgagg
tgctcctggtctactgacggcagtaagatagctgccggctcagctgacagatttgtgtac
atctgggacaccacatcacgcagaatcctgtacaagctgccgggacatgccggctccgtc
aacgaagtcgcctttcacccagaggagcctatagtgctgtctggtgccagtgataaaagg
ctctacatgggagaaattcagtag

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