Notothenia coriiceps (black rockcod): 104967429
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Entry
104967429 CDS
T04920
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncc04121
]
104967429 (rbbp6)
Enzymes [BR:
ncc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104967429 (rbbp6)
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
U-box type E3
104967429 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
zf-RING_2
zf-RING_UBOX
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
104967429
NCBI-ProteinID:
XP_010795173
UniProt:
A0A6I9Q3G3
LinkDB
All DBs
Position
Unknown
AA seq
1785 aa
AA seq
DB search
MSCVHYKFSSKLDYNTVTFDGLHITLNELKKQIMGRERLKATDCDLQITNAQTREEYTDD
EIHIPKHSSVIVRRTPLGGVKPAGRTFIVDRSDTAVVGSSRPTDSSPSMSLAQLAKTANL
VDANASEDDKIKAMMSQSNHEYDPIHYSKKAVGPPPAHYTCFRCGKAGHYIRQCPLLLIQ
DKSVEGPKPVRISKGIPQSFMVKAEPGTKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
PHDQSSSEDDTDPIPDELLCPICNDLMTDAVVIPCCGNSYCDDCIRTTLLDSEEHICFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKQLRKQVQNSAPPPPRLQLLRQSRQQDPLM
AHIPQPPPPPPPPTITPPTAPTAPPVRVPSPAAAPSPAAAPAPASPSAPTPPHADSVEEL
LKEVDSPAPEPVVDHHSPIHSTSHSEPPPRGEVDPEPYVRPDSSGPSESGPPQNYRLPVM
GHPPPLRPPPHPPHPPHPPHPPHPPHLPGHQSRPNQQSHRGGGRPWERFNRGRPEHPPPY
LQSGPPPAPIPPMYPAPSMYPPPPQSYPPPYSSGPGLLPPVMGYPPQPVYVPGPPRLNPP
WVPPGVQPPLMPLPPMPQPPLSKEDFYRQRHHRQDNVTSKLDEFTKDFHKELMKYRNAPK
RRKPSYSRSRSYSRSPFSRSPYSRSRSRSRSYSYSPSRSRSRSHGRSYPRSPYSRRNGRS
YGRSRSRSRSRSRSYGYRRSGSPRSPPPFRPGGWEGAEGAGPGPGPVPYRSRSRSPGPGP
AGFRPRSPGGRKPPPRELPPYEMKGPSPGGNDRWEKERYRQWEKEYAEWYNKYYKGYDNQ
HPSMHHKGRGSRDREKDRMSPLNRDYSPQGRGRRGREERGAPPHHPQSSSSSAAKSSSKL
LKTKKVKKKRTGDESESSHQSVDRGDATPVRDEPMDDVPSLLKSPPSSSKASAASSKAPS
SKGASSKPSTKSTSKTPSDKTKKDKALKVKAKVKTEGVKVKTEKVKKKTVEAVVTKKKDS
SSSSSSSTTKPLKSVKPKQEDAPNPTTPKKEKSKSSAVRPPLLKTPPLSSLHHPSLHDGL
RQGHDIHGRRDLPQGGGLLPIPHQHGLPLLLHRPPSPDSRRRMGEEGRSILGPPPGKLRR
IDGLGGGVDVMSHSHMSHQPPMSHQPPVHRLPHSDRPGLLPIPGSREMGRGEAERGSIRP
LMDLQVKPLTQRRIKLNRDLGRKGSTETPPSDRAPSGPEKTPSTSDRSAAANVSEGDRAS
GAAEAAGRKERSASAERGVSRERPGSAGDRPQGSDREQSRTSGQDRERDRGSDRDRERGT
ASERDRERGTPSERDRERGTPSDRDRERDRGSQKIAVTVERDPEAERSVRTERKNSGSGG
RSVSLDKMTIAEKSSTSRSSTEPQEKPSTSSKERGEGSERSAKSHRSVSKDRAERSVPAG
EKPAAAPHREAVKDSEGPVAKSKPKISRKVLTSSTKSTQETKRESDKDQKSASSKPAEQP
PSSPVGARSPSLSPAVSPAMEEPVIQPPPRSKWEREEDEEGQENGLTAPKEPSPAPQKSR
GREGPSEAPKPVRGEGPDATREERRGVAREEKKARAPREEGKGGRTTQTNSDKPTKIKLG
REEGRGGREEGRAPKRDEGRGVTGKEERAAEGRGGGGPEPRRQRLCSDLGRETDEAAFVP
DYSEGEGSEAERGGSASVSNSQPSTPTPSNHSGTATSTTGDKKKKKHKKHKKHKKHKKHS
IQEKEGEQKEHKHKHKKKKHKKSKDKDVEEEDEEKMEKAEEVASC
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactataagttttcttccaaactggactacaacacagtcactttcgat
ggactgcatatcaccctcaacgagcttaaaaagcagattatgggccgagagcgcctcaag
gccacagactgcgacctgcagatcaccaatgcgcagactcgagaagaatacacagatgat
gaaatccacatcccgaagcactcgtccgtgatcgttcgccgtactccgcttggtggagta
aaacctgctggcaggacgttcattgtagatcgttctgacacagctgtggtgggatcttct
agacccactgattcttctccatctatgtcacttgcccaactagccaagacggctaacctg
gttgacgctaatgcatcagaggacgacaagattaaagccatgatgtctcagtccaatcat
gaatatgacccaatacattactccaagaaggcagttggacctccgcctgctcactatacc
tgctttcgttgtggaaaggctggccactatattcgacaatgccccttgctcctgatccag
gataagagtgtggagggtcctaagccagtaaggatcagtaaaggcattcctcagagcttc
atggtgaaagcagagccaggcactaagggagccatgttaaccagcaccggagaatacgcc
atacctgcaatagatgcggaggcatacgcacaaggaaagaaggagcggcctccgtttgtt
ccgcacgaccagtcatcatctgaggacgacacagacccaatcccagacgaactgctgtgt
ccgatctgcaacgacctcatgacggatgccgtagtgataccctgctgtggaaacagttac
tgtgatgattgtatcagaacaaccttattggactccgaggagcacatctgcttcacatgc
aaacagtcagacgtttcaccggataatcttatcgccaacaagtttcttagacaggctgtc
aataactttaagaatgagacgggatacaccaaacaattgcgcaagcaggtccaaaattca
gccccgcctccaccgcgcctccagctgctccggcagtccaggcagcaggacccactgatg
gctcacatccctcagccccctcctcctcctcctcctcctacgatcaccccccccactgcc
cccactgcccccccagtaagggtcccgtcgcccgcagctgctccttcacctgctgctgct
cctgctcctgcatctccttctgctcctacccctcctcatgctgactctgttgaagaactg
ttgaaggaggttgactctccagcccccgaacctgttgttgaccaccactctcctattcac
tccaccagccacagtgaaccacccccacgcggtgaggtggatcctgaaccttatgtgaga
ccagactcatcaggaccctcggaaagtggaccaccgcagaactaccgtttacctgtaatg
ggccacccgccacctttaaggccacctcctcatcctcctcatcctcctcaccctcctcat
cctcctcaccctcctcatcttcccggtcaccagtcccggccaaaccaacaatctcacagg
gggggaggcaggccctgggagaggtttaacagaggcagaccggagcacccccccccttac
ctccagtcaggcccaccccctgcacctattcctccaatgtacccagcaccctccatgtac
cctcccccaccacagtcctacccacctccgtactcctctggccctggccttctccctcct
gtcatgggttacccaccccagcctgtgtatgtccccggaccaccacggctgaaccccccc
tgggttccccctggtgtccagccccctctcatgcccctgccccccatgcctcagcccccc
ctctctaaagaagatttctacagacagcgacaccacagacaagacaatgtcacctccaaa
ctagatgaatttactaaagacttccacaaagagcttatgaagtacagaaatgcaccaaag
agaagaaaaccatcttattcaagatcccggtcctacagtcgctctccgttcagccgttct
ccttactctcgctccagatcaagatccaggtcctactcttattccccgagtcgatcccgc
tcacgctcccatggccggtcctatccccgctccccttattcaagacgtaatggacgtagt
tatggacgctcacgttcaaggtcccgctctcgctcaaggtcttatggatatcggcgctct
ggctccccacggtcccctccccctttccgcccaggtggctgggagggagcagaaggagcc
ggacccggtcccggtcccgtaccctacaggtcacgctctcgctcccctggccctggccct
gctggtttccgtccccgcagccctggaggacgaaagccgcccccccgggagctcccaccg
tatgaaatgaagggtccgagtcctggtggcaatgaccgctgggaaaaagaaaggtatcga
cagtgggagaaggaatatgccgagtggtacaacaagtactacaaaggctatgacaaccaa
catccctcaatgcatcacaaaggtcgtggcagcagagacagggagaaggacagaatgtcc
ccattaaatagagactactccccccaagggagaggaagaagagggcgggaagagagaggt
gctccccctcatcatcctcagtcttcctcctcctcagccgccaagtccagttccaaactc
ttaaagacaaagaaagtaaagaagaagaggactggggacgaatcggagtcgtcccaccag
tcagtggacagaggggacgctactcctgtcagagacgaaccaatggacgatgtgccttca
ctccttaaatctcctccttcttcctcaaaggcttcagccgcatcctctaaagctccgtcc
tctaaaggcgcatccagcaaaccctcaaccaagtcgacatcgaagactccgtccgataag
acgaagaaggacaaggctctgaaggtcaaagctaaagtcaagacagagggcgtgaaggtt
aagacggagaaggtgaagaaaaagactgtggaggcagttgttaccaaaaagaaagactct
tcctcctcttcctcttcctccaccactaagccgctaaagagcgttaaacccaaacaagaa
gatgcccctaacccaactacccctaaaaaggaaaagagtaaaagctcagcagtgaggccc
cccctgctaaagacccctccactgtcctctctacaccatccctctcttcatgacgggctt
cgccagggccacgacatccacgggagaagggatctcccccagggcggtggtctcctcccc
atccctcaccaacacggactccctctcctcctccaccgccctccctcccctgacagtcgg
aggagaatgggtgaggagggccgctctattctcggaccacctcctggaaagctgaggaga
attgatgggctcgggggtggagttgatgtcatgtcccattcccacatgtctcaccagccc
cccatgtctcaccagccccccgtccacagactcccccactcagacagaccgggtcttctt
cccataccagggagccgcgagatgggccggggagaagcagagcgagggtccatccgaccg
ctcatggaccttcaggtgaagcccctgacccagaggaggatcaagttgaacagagatctg
ggaagaaaaggcagcactgagaccccaccctcagacagagccccgtctggtcccgagaag
acgccctccacctcggaccgatcagctgcggctaacgtgtccgaaggagaccgagccagc
ggtgcagcagaagcagccggaaggaaggagcggtctgcatctgctgagaggggggtctcc
agagagagaccaggaagtgctggagacagacctcagggatcggacagggagcagagccga
acctcgggacaggacagagagcgagacagagggtctgacagagacagagagagaggcact
gcgtctgagagagacagagagagaggcacgccatccgaaagagaccgagagagaggcacg
ccgtccgacagagaccgagagagagacaggggatcacagaagatcgcagtcacggtggag
agagaccctgaagctgagaggtcggtgaggacggagcgaaagaactccggttcaggaggg
cggtctgtctctctggataaaatgaccatcgcagagaagtcgtccacctccaggagctcg
acggagcctcaggagaagccgagcacatcctccaaggagagaggcgaagggtcagaacga
tcggctaaatctcacaggagcgtgtcgaaggacagagccgagaggagtgtccctgcagga
gagaagccagctgctgctcctcacagagaagcagttaaagacagcgaggggccagttgct
aaaagcaaaccgaagatcagcaggaaggtcctgaccagctccacaaagtcaactcaagaa
acaaagcgagagtcagacaaagatcagaagagtgcctcctccaaacctgcagagcagcct
ccgtccagccctgtgggtgcccgcagcccgagcctcagcccggcagtgagcccagccatg
gaggagccggtcatccagcccccccctcgctccaagtgggagagagaagaggacgaagaa
ggccaggaaaacggacttactgcacccaaggagccctcaccagcaccccagaagagccga
ggcagggaggggccgagcgaagcacctaaacccgtcaggggggaggggccggatgcaacc
agggaggagaggagaggagtcgcacgggaagagaagaaggcgagggcacccagggaagag
ggtaaaggtgggaggacgacacagacaaattctgacaaaccaaccaaaatcaaacttggg
agggaggaggggagaggggggagagaggaaggcagagctccaaagagagatgaggggcga
ggagtgacggggaaggaggagagggccgcagaaggcaggggggggggaggaccagagccc
aggagacagcgcctgtgctcggacctcgggcgggagacagacgaggccgcctttgtgccc
gactacagcgaaggagaggggtcagaggcggagagagggggcagcgccagcgtctccaac
agccaaccctccacccccacccctagcaaccacagcggcacggcaacatccaccaccggg
gacaagaagaagaagaaacacaagaaacataagaaacacaagaagcacaagaagcacagc
atccaggagaaagaaggagaacagaaggagcacaagcacaaacacaagaaaaagaaacac
aaaaagagcaaggacaaagatgtggaggaggaggacgaggagaagatggagaaagcagag
gaagtggcttcttgctaa
DBGET
integrated database retrieval system
