Notothenia coriiceps (black rockcod): 104968029
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Entry
104968029 CDS
T04920
Symbol
fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104968029 (fip1l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104968029 (fip1l1)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104968029 (fip1l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
104968029
NCBI-ProteinID:
XP_010795875
UniProt:
A0A6I9Q6Q3
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All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MSAEEADKTGTTDASGGDEEEEWLYGDEDEDEEAKLNAAVSAPADASTEDAAEHATGNGV
ASEATGEGEGEGEGVTEDVDSDSDSDDDDDDVRITIGVIKTGAPQYTTYGAPPVNLNIKT
SGSRPYGQASKMKGVDLDGPGNINGAPVLEADMETFEEKPWRKPGADLSDYFNYGFNEDT
WKAYCEKQKRLRMGLEVSTVSSVASKITVQQGRTGNDKDICVLPVHTSKPDFTSPLNMYK
PVISQVTRISPPQWPGPPPPQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQ
VISESTDSEPTQPAKIPPFFPPGGLPPNIPPPPFLPPPPNVNSAPPLIPPPRLPINVPPP
GFPPPPSGPPPTIIPTLDSHSGGYDGRSVPPYPFPQGAYPPPMAGNVPPPWPPMMDNSKP
WDYYPRREDKREKERERPRERTHEREREREHSPSAMGYTSEEERYRYREYQERGYAGERH
RERSSREKEEGRHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEGK
DAGEEISADQENQPGME
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaaacaggcaccactgatgccagcggtggagatgaggag
gaagaatggctatatggagatgaggacgaggacgaggaagccaaactgaatgctgctgtc
agtgcacctgctgatgcctccacagaggacgctgctgaacacgctacagggaatggagtg
gcctctgaggcgacaggggagggcgagggtgaaggtgaaggcgtaaccgaggatgttgat
agtgacagtgacagtgatgatgacgacgatgatgtccgcatcactattggagtcattaaa
actggagcaccacagtacacaacttacggagctccccctgtcaatctcaacataaagacc
tcaggctccagaccttatggacaagcctccaagatgaaaggagtggatctggacggacct
ggaaacataaacggggctccagtgctggaggcagacatggagacctttgaagagaagccc
tggaggaagccaggagcggatctgtcagactactttaattacggcttcaatgaagacaca
tggaaggcttactgtgaaaaacagaagaggctgcgcatgggcctggaggtctctaccgtc
agctctgtggcgagcaagatcaccgttcagcaaggcaggacaggcaatgacaaggacata
tgcgttttgcctgttcacacctccaaaccagacttcacatctcctctcaacatgtacaag
cccgttatcagtcaggtcaccaggatctctccccctcagtggcccggcccgcctcctcct
caggacatgtcctattatacgaagacgagtggtacgatagatgtgattggtggaggaacg
gccaccatcagcagggtcgaaggccgacgcagacacaacctggaaggcaacaatatccag
gtgatctctgaaagtacagactctgagccgactcagccggctaagatccccccgttcttc
ccccccgggggccttccacccaacatacctcctcctccattcctccctccaccaccaaac
gtcaactctgcacccccactcatccccccacccaggttgcccattaatgtccctcctcct
ggttttcctcctccccccagtgggccccctcctacaatcatccccactctggacagtcac
tctggaggttatgacggacgctctgtccctccctacccgttccctcaaggtgcgtaccct
ccacccatggctggaaatgtgcctcctccttggccccccatgatggacaactccaagccc
tgggactactatccccgtcgagaagacaagagagagaaggagagagagcggccccgagag
aggacacatgagcgggagagagagagggagcacagcccgtcagctatgggctacaccagc
gaagaggagcggtatcgttaccgtgagtaccaggagcgcggttatgcaggagagcgacat
cgtgagcgctcgagccgagagaaagaggaggggcgccacagagagaggcggcacagagag
aaagaggaggggcgccacaagtcctctcgcagcagtagcaggaggaggcacgacagcgag
gagggcgacagccaccggaggcacaaacacaagaagagcaagaggagcaaggagggcaaa
gacgccggcgaggagatcagcgcagaccaagagaaccagccgggcatggagtag
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