Natranaerofaba carboxydovora: ACONDI_00942
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Entry
ACONDI_00942 CDS
T07970
Symbol
sigD
Name
(GenBank) RNA polymerase sigma-D factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd02020
Two-component system
ncd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACONDI_00942 (sigD)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACONDI_00942 (sigD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncd03021
]
ACONDI_00942 (sigD)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ncd02035
]
ACONDI_00942 (sigD)
Transcription machinery [BR:
ncd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACONDI_00942 (sigD)
Bacterial motility proteins [BR:
ncd02035
]
Flagellar system
Flagellar assembly proteins
Stator
ACONDI_00942 (sigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
Sigma70_r2
UPF0122
GerE
HTH_23
MarR
PhyR_sigma-like
MarR_2
DUF1492
PCI
HTH_5
SPOB_ab
Sigma70_ECF
Clr5
Motif
Other DBs
NCBI-ProteinID:
UMZ73388
LinkDB
All DBs
Position
974580..975359
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AA seq
259 aa
AA seq
DB search
MPDWSFYDLLKTYQKNHDSKILEDLLEKNISLVEHQVKKIYSNHLTTYLNITKEDLISFG
LMGLLDSFNKYDFKKEISFESYARLRIKGSIIDGIRKFDFAPRYFREKAINYSEASFKLE
KDFGRPPTEKELASYIGITVGELQKFWQKASYLTPLYLDKLISFEDEDSETFKDRLADDK
QPSPEEAFEKQIDSKLLKDLIEDLPEREQLILSLYYYEDLTIKEIAEVMEISESRVSQLH
SKAIYRLRGKLAWRKNRLS
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgattggagtttttatgatttactaaagacataccaaaaaaatcatgattctaaa
atattagaggatttattggaaaaaaacatttctttagtagaacatcaagttaaaaaaata
tatagtaatcatctaactacatatttaaacattacaaaagaagatcttatttcatttggt
ttaatgggactattagattcatttaataagtatgattttaaaaaagaaatttcatttgag
agttatgccaggttgaggattaaaggttctataattgatggtatcagaaagtttgatttt
gcaccaagatattttagggaaaaagctataaattacagtgaagctagttttaaattagaa
aaagattttggcaggcctcccaccgaaaaagaactagcctcttatatagggattacagtt
ggagaattacaaaagttttggcaaaaagcctcttacttaactcctttgtatttggataaa
ttgatttcctttgaagatgaggatagtgagacatttaaagataggctagcagacgacaaa
cagccatctccagaagaagcttttgaaaaacaaatagatagtaaattattaaaggattta
atagaagacttgccagaaagagaacaattgattctttccttatattattatgaagatttg
acaattaaggagattgcagaagtaatggagatctctgaatcacgggtgagccagttacat
agtaaagctatatacaggcttaggggaaaacttgcctggagaaaaaatagattgagttaa
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integrated database retrieval system
