Natranaerofaba carboxydovora: ACONDI_00980
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Entry
ACONDI_00980 CDS
T07970
Symbol
rnjA
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACONDI_00980 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncd03019
]
ACONDI_00980 (rnjA)
Messenger RNA biogenesis [BR:
ncd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACONDI_00980 (rnjA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UMZ73426
LinkDB
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Position
1009860..1011524
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AA seq
554 aa
AA seq
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MSSSEKLQIIPMGGLGEIGKNMFVIRYDKEFIIIDAGLKFPEEEMLGVDFVIPDFSYVMD
NKQHLKGIFLTHGHEDHIGALPYLLENIDAPVYATKLTLGLVERKLKEHSNLKKANLKQL
NPNNKMPIGPFEMEFFRTNHSIPDSIGIIIGTPEGKIVHSGDFKFDHTPVNGMKADFGKL
AKLGDENVLCLISDSTNAEHEGFTSSERQVGETFDNIFREAPQRVILATFASNIHRIQQI
LNSAKKYGRKVGIVGRSMKNVVDVASELNYLKNTEVIVESIEELNNMPFDKTALITTGSQ
GEPMSALTRIASDDHSKIQIKPHDTVVIAASPIPGNEKLVSRSIDNLYKRGADVIYKSTS
GVHVSGHASQEELKLLLNLVKPRYLIPFHGEHRMMVHHKQIAEKLGMPSKNVFLVDNGTV
IEFKDKKGKVNGKVSAGKVLVDGLGVGDVGNIVLRDRRLLSQDGILIVVLTIDKQNLELV
AGPDIISRGFVYVRESEELLETAREHVIDALNKMSKNKMSEWQAIKSNVKDVLGNFLFEK
TRRRPMILPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgtctagttccgaaaaattacaaataatcccaatgggtggtttgggtgagatcgggaaa
aacatgtttgttatccggtatgataaggaatttatcattattgatgcgggcttaaaattt
cctgaagaggaaatgctgggtgtggattttgtcatacctgattttagttacgtaatggat
aacaagcagcatcttaaagggatcttcttgactcatggtcatgaagaccatatcggtgcg
cttccctatttgcttgaaaacattgatgcaccggtttatgcaactaaactcacccttggg
ttagtagaaagaaagcttaaagaacatagtaatttaaaaaaagcaaacttaaaacagtta
aacccaaacaataaaatgcctataggaccttttgaaatggagttttttagaacgaatcat
agcattcctgattctataggtataattataggtacaccagagggtaagattgtacacagt
ggagattttaaattcgaccatacccctgttaatggcatgaaagctgattttggcaagcta
gctaaattaggggatgagaatgttctttgcttaatttcagacagtacaaatgcagagcat
gaaggttttacttctagtgaaagacaagtaggagaaacatttgataatatatttagagaa
gctccccaaagggttatacttgcaacttttgcatctaacattcacagaatacagcaaatt
ttaaactccgccaaaaagtatgggcgaaaagtaggtatagttggaagaagtatgaaaaat
gttgtagatgtcgcaagtgagctcaactacttaaagaatactgaagtaatagtggaaagt
attgaagagttgaataatatgccctttgataagacagctttgatcacaacaggaagccaa
ggagaacctatgagtgctcttaccagaattgcttcagatgatcattctaaaatacagatc
aagcctcatgatacagtggtaattgcggcatcgccaatacccgggaatgaaaagcttgtt
tcaagaagtatagacaatctgtacaaaagaggagcggacgtaatttataagtctacctcg
ggagtacacgtttctggtcatgcaagccaagaagagcttaagcttctcttaaaccttgta
aaaccaaggtatcttataccttttcatggtgaacatagaatgatggttcatcataaacaa
atagctgaaaagttaggtatgccatccaaaaatgtttttttggttgacaatggaactgta
attgaatttaaagacaagaaaggcaaagtaaatggaaaagtttctgcaggcaaggtatta
gttgatggtttaggcgttggtgacgttggcaatatagttctcagagacaggagacttttg
agccaggatgggattttgattgtcgtgcttaccatagacaaacaaaaccttgaactggtg
gcaggtccagatataatttcaagaggatttgtctatgttagggaatcagaagaacttttg
gaaaccgcaagagaacacgttattgatgctttaaacaaaatgtcaaagaacaagatgagt
gaatggcaggctattaaaagtaatgtgaaggatgtgcttgggaatttcctttttgaaaaa
actcgcagacgcccaatgatattaccaataataatggaaatttaa
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