Natranaerofaba carboxydovora: ACONDI_01462
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Entry
ACONDI_01462 CDS
T07970
Symbol
ypfD
Name
(GenBank) 30S ribosomal protein S1
KO
K02945
small subunit ribosomal protein S1
K03527
4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:
1.17.7.4
]
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd00900
Terpenoid backbone biosynthesis
ncd01100
Metabolic pathways
ncd01110
Biosynthesis of secondary metabolites
ncd03010
Ribosome
Module
ncd_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
ACONDI_01462 (ypfD)
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
ACONDI_01462 (ypfD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
ncd03011
]
ACONDI_01462 (ypfD)
Enzymes [BR:
ncd01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.7 With an iron-sulfur protein as acceptor
1.17.7.4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
ACONDI_01462 (ypfD)
Ribosome [BR:
ncd03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
ACONDI_01462 (ypfD)
Bacteria
ACONDI_01462 (ypfD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LYTB
S1
S1_RRP5
Spt6_S1
OB_RRP5_4th
MRP-S35
EXOSC1
Fe-ADH
AlaDh_PNT_N
NAD_kinase
Motif
Other DBs
NCBI-ProteinID:
UMZ73892
LinkDB
All DBs
Position
complement(1550032..1552068)
Genome browser
AA seq
678 aa
AA seq
DB search
MEVIIAEKAGFCQGVKSALDKTYNQVENDNTVFTYGPLVHNKQVVDDLKSKGVKTIEEID
DLEPGSSLVIRSHGVGPEVFREAKEKNIEIIDATCPFVKKVQKKANELYNKGYQVFIIGD
PNHPEVSAIHKWTYKKGIIINHKEIAKWIKVRNKSAIVCQTTFRKFDFNQIVSALKDKNP
AIQVNETICDATSVRQESARILAREVDIMIVIGGYNSSNTRKLKELSLKEGVQTYHIEKA
NDINPKWFINSNKIGLTAGASTPDWIIKEVIDKMSEYQNEQAKDKLENNSFEKDQLVDGE
IVKILDTKAFVDIGHKKEAILPHSEVYTKPDESLNDIFNEGEKIEAKILKIETSRDEGEE
EEETVIISKKLVEKEKVWEWLEKIYENGEIIESEVVEEVKGGLIVYLNGLRGFIPASLVE
RFYVPDLSQYVGKTLRLKVIELDRSRNKVLLSHKDVLDEEYEQKKREVLDKIEEDSIIEG
EVKRVTDFGAFIDVGGIDGLCHISEISFDRVEHPTDVLQVGDKVKVKVLNVDKEKEKIAL
SLKKAMPDPWEKVSEEFNPGDIVEGKVTRTVDFGAFIEVMSGVEGLCHISQLAHEHVAKT
EDVVKEGDKIKVKILDINLEQKRVSLSLKEVNPLEKNEPKEQKNNKADEDKIEEDDGSVK
LGEVFGNVLKEFKEDDDK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtggaggtgataattgctgagaaggccgggttttgtcagggggtaaaaagtgcactagac
aaaacatataatcaggtagaaaacgataatacagttttcacttatggtcctcttgtacat
aataaacaggtggtagatgacctaaaatcaaaaggtgttaaaacaatagaagagatagat
gatctagaaccagggagcagtttagtgataagaagccatggagtaggcccggaagttttt
agagaggcaaaagaaaagaatatcgaaatcattgatgctacatgtccttttgtaaaaaaa
gtacaaaagaaagcgaatgaattatataataaaggctaccaagtatttattattggcgac
ccaaatcatccggaggtaagtgctatacataaatggacatacaaaaagggaataattatt
aatcataaggaaatagctaaatggattaaggtgagaaacaaatccgctatagtgtgtcaa
acaacatttagaaaatttgattttaaccaaattgtaagtgccttaaaagataaaaaccct
gctattcaagtcaatgaaacaatttgtgatgcaacctctgtaaggcaagaatctgcaaga
atactagctagagaagttgatataatgattgtaattggtgggtataacagttctaacaca
cgaaaattaaaagaattatctttaaaagaaggtgtccaaacttaccatattgagaaagct
aatgacataaatccaaagtggtttataaatagcaataaaattggacttactgcaggagca
tcaacaccggattggataataaaggaggttattgacaaaatgagtgagtatcaaaatgaa
caagctaaagacaagcttgaaaataatagctttgaaaaagaccagcttgtagatggtgag
attgtcaaaatactagatactaaagcatttgtagatattggtcacaaaaaagaagctatc
ctaccccattctgaagtttatactaaacctgatgaaagtttaaatgatatctttaatgaa
ggcgaaaaaatagaagccaaaatattaaaaattgaaacttcaagagatgagggtgaagag
gaagaggaaactgttatcatatctaaaaaactagtagaaaaagaaaaagtatgggaatgg
cttgaaaagatttatgaaaatggagaaattattgaatcggaagttgttgaagaagtaaag
ggaggtttgattgtttatttaaatggtttgaggggttttataccggcctctttagttgaa
aggttttatgtgcctgacttgagccagtatgttgggaagactttgagattaaaggtgatt
gaactggacagatcgagaaataaggtgcttttaagtcataaagatgtgctagatgaagag
tatgaacaaaaaaagcgcgaagttttggacaaaattgaagaagattctattattgaagga
gaagtaaaaagagtaacagactttggagcttttatagatgtaggtggcattgatggtctt
tgtcatatttctgagatctcctttgacagggttgaacatcctacagatgtattacaggtt
ggagacaaagtaaaagttaaagttttaaatgtggataaggaaaaagaaaaaattgcactt
agcctgaaaaaagctatgccagatccctgggaaaaagtttcagaagaatttaacccaggc
gatattgtagaaggtaaagttacaagaacagttgattttggtgcttttattgaagtgatg
tctggagtagaaggactttgtcatatatctcaactagcccatgaacacgttgcaaaaaca
gaagatgtagttaaagaaggcgataagattaaagtaaagattttggatattaatttagaa
caaaaaagagttagcttaagtttaaaagaggtaaatccactagaaaaaaatgaacctaaa
gaacaaaagaataacaaagcagatgaagacaagatcgaagaagacgatggaagtgtaaaa
ttaggagaagtttttggaaatgttttgaaagaatttaaagaagatgatgataaatag
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