Natranaerofaba carboxydovora: ACONDI_01851
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Entry
ACONDI_01851 CDS
T07970
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd02020
Two-component system
ncd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACONDI_01851 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACONDI_01851 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncd03021
]
ACONDI_01851 (rpoN)
Transcription machinery [BR:
ncd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACONDI_01851 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_3
HTH_IclR
DUF2718
LacI
Motif
Other DBs
NCBI-ProteinID:
UMZ74264
LinkDB
All DBs
Position
complement(1945766..1947187)
Genome browser
AA seq
473 aa
AA seq
DB search
MKIDHNLKLEQSQKLIITPELKQAIKLLQMSKTELETYVEQELKSNPVLEKESSNEEAQT
KDTADRTENEASENEGIDNNDKYDLDWQDYFADSSDVTGGAFQNSSYTPQNQDSFEVFTS
SETTFIEYLNFQLSLLDIDTEIREVCEFIVGSLDSNGYLSIYLTELSKFTEYSIDKLQEA
LELVQTLDPPGVAARDLKECLLIQVYDKIESENISKKVIPLIENHLSDIAENKIKNIASS
LEISTDEVQSMVDFIKTLNPKPAASYFTGEKTAYVVPEAFIEKVDDEYIIIMNDNLAPNL
RISPSYRSIMNNNRCSETKEFISSRMDSAMWLIKAIEQRRRTIYRVIECIVDIQRAFFEE
GVSGLKMLTLNDVAERIDVHESTVSRATANKYVQTPRGIYSLRFFFDSSSSTKVKHIIKQ
LIENEDQNNPLSDEKIASILKENESVEVSRRTVAKYRKELNIPSSSKRKRFSK
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgatcataatcttaagttagaacaatcgcaaaaattaataattactccagaa
ctaaagcaggcgattaaacttttacaaatgtcaaaaaccgagcttgaaacttatgttgaa
caggagttaaaatctaatccagttttggagaaagaaagctctaatgaagaagcacaaact
aaggatacagctgatagaaccgaaaatgaagcctcagagaatgaaggcattgataataat
gataagtatgatctagactggcaggattattttgccgattcaagtgatgtgactggaggt
gcatttcaaaatagtagctatactcctcaaaatcaggatagttttgaagtgtttacctca
agtgagactacttttattgagtatttgaattttcagcttagtttattggatatcgatact
gaaattagagaagtttgtgaatttatagttggcagccttgattcaaacggttatctttct
atatatcttactgaactatcaaagtttactgaatattccatagataagctgcaggaagca
ttagagctggtacaaacccttgatcctcctggagttgcggcaagagatcttaaagaatgt
ttgcttatacaggtctatgacaaaattgaatcagaaaatatatccaagaaagttattcct
cttattgaaaaccatctttcagatattgcagaaaacaaaataaagaatattgcatctagc
cttgagatatcaaccgatgaagttcaatctatggtggattttatcaaaactctaaaccca
aaacccgctgcttcttactttacgggagaaaagacagcctatgtagttccagaagcattt
attgaaaaggtggatgacgagtatataattattatgaatgataacctagctcctaatctt
agaataagtccctcctacaggagtataatgaataataatagatgctctgagacgaaagaa
tttattagttctaggatggactcggccatgtggcttataaaagcaatagagcagcgcaga
aggactatctatagagttatagagtgtattgttgatatacagagggctttttttgaagaa
ggggtatcagggcttaagatgttaacattgaatgatgtagcagagagaattgatgtgcac
gagtctactgttagcagagctactgctaataagtatgtacaaacgccaaggggaatttat
tcattgaggttcttctttgattcatcctcctctaccaaagttaaacacatcataaagcag
ctaattgagaacgaggaccaaaacaatcctttgagtgatgaaaagattgcctcgatcctt
aaagaaaatgagagtgtagaagtgtccaggagaacagtagcaaaatatcgaaaagaactt
aatattccttcgtcttcaaagcgaaagagatttagtaaatga
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