Natranaerofaba carboxydovora: ACONDI_02894
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Entry
ACONDI_02894 CDS
T07970
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACONDI_02894 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncd03400
]
ACONDI_02894 (mfd)
Enzymes [BR:
ncd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACONDI_02894 (mfd)
DNA repair and recombination proteins [BR:
ncd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACONDI_02894 (mfd)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
UMZ75275
LinkDB
All DBs
Position
3059844..3063401
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AA seq
1185 aa
AA seq
DB search
MIDILKKDEVFYRISDNVLKDKNQLITGISESQKSLFISTLYQHYKKKILVLTQDNYEAE
KIYTDLSNWLDKDELFLYPGHSVLPFEMIGHSKDVEYERAKFFHCLFSKKPYVVVISVKA
FCEKLPPKEVVERNIVNVKSGENVEMDELLKRLVSLGYEKVQMVEAPGQFSSRGGIIDVF
SMAEDYPVRLELFDDEIESLRYFDVKTQRSVDELSEILIPPKNYLVLEKSLIEKGSKAIQ
KELKNISAKLTKKGKNYEANNLKDRVNQELEFIKQGLYVSGSQRYINFFYDNIDDFLGLI
SDDTLIWLDEANRLKESYEFLEHQIEEVSSSLLQEGKILPSESDLFFRLEDIISPCKNPV
IFSQGLKREVPFKKPISIETLSSKPMTSFQGNWELFIGELKQWTYDKYKIIILAPNEERV
KALIENLTAESINARFVKDFSESIESIDDKSEVLVTVGQLNKGFAYQNAGLVIVSYKDIF
GDKKKTRIKREKKREDTIKLSDYRELNVGDYVVHEQHGIGEYLGVSTLEVNGLFKDYLHI
KYAGNDKLYIPTDQIHEIEKFVGGEGKKPKLSSLGGGEWNKVKKKVKKSVHDLAKELLDL
YAKRNAQKGYAFSPDTPWQKEFEDYFPYELTPDQKKAIEEVKNDMEKEKVMDRLLCGDVG
YGKTEVAMRAAFKAIMDGKQVAMLVPTTILGEQHYKTFIERFNPFPVDIRVLSRFSTLAE
EKEIFEGIKEGKIDILIGTHKLLNEKVKFKDLGLLIIDEEQRFGVKHKERIKMLRKNVDV
LTMTATPIPRTLHMSLVSVRDLSVIETPPQGRFPVQTYVMEYSPQLIREAIRRELNRDGQ
VYVVYNRVQGINKIAKEVMELVPEANITVAHGQMAERKLEKVMLDFLEKEYDVLVSTSIV
EAGLDIQNVNTIIIFDADRMGLSQLYQLRGRVGRSDKMAYAYLTYRKDKVLTKEAEKRLQ
AIKEFTELGSGFKLALRDLEIRGAGNILGPEQHGFIMAVGFDMYCKMLEDAVKNIRGESE
EDTQETKTQTTPQVELNLNAYLPFDYIPDHGQKIDIYQKVSKIESLKENEDLYEELKDRF
GPPPQPALNLLDVAAIKIKAKSCGIGSIREEDSIILLEFNSMENIKGQKLLMLTEKFRDR
LTVSYSDVLILKLNKKGLSEDKILKILKELLDSLSKLRMDEVKSS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatattcttaaaaaagatgaggttttttacagaataagtgataatgtattaaaa
gataaaaaccagctaattactggtatatcagaaagccagaaaagtctatttatttcaact
ttgtatcaacattataaaaaaaagattttggtactaactcaagacaactatgaagcagaa
aaaatatatactgatctaagcaattggttagataaggatgaattatttctttatccgggt
cattctgtgcttccttttgagatgataggacacagcaaagatgtagaatatgagagagca
aaattttttcactgtctcttttctaaaaagccttatgtagtagtgatatcggtaaaagct
ttttgtgagaaattgccccctaaagaagttgttgaaaggaatatagttaatgtaaaaagc
ggcgaaaatgtagaaatggatgagttgttaaagcgccttgttagtttgggttatgaaaag
gtgcaaatggttgaagctccaggacagtttagcagcaggggtggcataatagatgttttt
tctatggctgaagattatcctgtaaggctggaactttttgatgatgaaatagaatcttta
agatattttgatgtaaaaactcaaagatccgttgatgaattaagtgaaatattgattccc
cccaaaaattatctggtgttagaaaaaagcctgattgaaaaaggttctaaagctatacaa
aaggaacttaaaaatatttctgctaaattaactaaaaaagggaaaaattatgaggcaaac
aacttaaaagatagggttaatcaggaattagaatttatcaaacaggggctatatgtttct
ggatcacaaagatatattaacttcttttatgataacatagatgattttttgggtttaata
tcagatgatactcttatatggctagatgaagctaatcgcttgaaagaaagttatgagttt
ttggagcaccagatcgaagaagtatcttcttctcttttgcaggaaggtaagatacttcct
tccgagagtgacttgtttttcagactagaagatattattagtccgtgtaagaatcctgtt
atattttcacaagggctaaagcgtgaagttcctttcaaaaagcctataagtatagaaacc
ctgtcaagcaagccgatgacaagctttcaaggaaattgggagctttttatcggagagtta
aaacaatggacctatgataaatataagataataattcttgcaccaaatgaagaaagggtt
aaagctttaatagaaaatttaacagcagaaagtattaatgctagatttgtaaaagatttt
tctgagagtattgagagtattgatgataagtcagaggttttggtgacggtaggacaattg
aataaaggctttgcctaccaaaatgcaggccttgttattgtcagttataaagatattttt
ggggacaagaaaaaaaccaggattaaaagagaaaagaaacgtgaggatacaattaagctt
tctgactacagagagcttaatgtaggggattatgtagttcatgaacagcatggaattggt
gaatacttgggggttagtacccttgaagttaatggactttttaaggattacctacacata
aaatatgcgggaaatgataaattatatattccaaccgatcagatccacgaaatagaaaag
tttgtaggaggagaagggaagaaaccaaagctttcctcccttggaggaggagaatggaat
aaagttaagaaaaaggtgaaaaagtcagttcatgatcttgcaaaagaacttttagacctt
tatgccaagagaaatgcccaaaaaggttatgcatttagcccggatactccctggcaaaaa
gaatttgaagattattttccttatgaattaacccctgatcaaaagaaagcgattgaagaa
gtgaaaaatgatatggaaaaagaaaaagtgatggataggctgttgtgtggagatgtaggt
tatggtaagacagaggtggcaatgagagcagcgtttaaggcaattatggacggcaaacag
gtggctatgttagttccaaccactattctcggagagcagcattataagacctttatagaa
agatttaatccctttcctgttgatatcagggttctttctagatttagcaccctagctgaa
gaaaaagaaatttttgaagggattaaagaaggcaaaatagatatattaatagggactcat
aaactgctgaatgaaaaagttaaatttaaggacctgggtttattaataatagatgaagaa
cagcggtttggtgtcaaacataaagaacggataaaaatgctaagaaaaaatgtagatgtc
cttacaatgactgcaactccaattccaagaactcttcatatgtctcttgttagtgtaaga
gacttaagtgtaattgagacaccgccacagggaagattcccggtacagacttatgttatg
gagtattccccacagctaataagagaagctattagaagggaacttaatagagatggacag
gtttatgtagtttataatagagtgcaggggattaataaaattgcaaaagaagttatggaa
ctagtcccagaagcaaatataacagtagctcatggtcagatggctgaaagaaaactagaa
aaagtgatgcttgattttttagaaaaggaatacgatgttttggtatcaacatcaattgtg
gaggcaggacttgatattcaaaatgtaaatacaataattatttttgacgctgatagaatg
ggattatctcagctttatcagcttcgcggaagagtaggaagaagtgacaaaatggcgtat
gcttatctgacatatcgaaaagacaaagttctaacaaaagaagctgaaaaacgtcttcaa
gctataaaagaattcacagagcttggttctggctttaagctagctttaagggatctagag
ataagaggtgctgggaatatcttaggtccagagcagcatggtttcataatggccgtagga
tttgatatgtactgtaaaatgttagaagacgcagtaaaaaatattagaggtgaatctgaa
gaagatacccaagaaacaaagactcaaacaactccacaagtagaactgaatttaaatgct
tatcttccttttgattatattccagaccacggtcaaaagatagatatctaccaaaaggtc
agtaagattgaaagtttaaaagaaaatgaagatctttatgaagagttaaaagatcgcttt
ggtccaccgccacagccggctttaaatttgcttgatgtggcagcaataaaaataaaagca
aaaagttgtgggataggctctattagggaagaagatagcattattttacttgagtttaat
tcaatggaaaatataaaaggtcaaaaactacttatgcttacagaaaagttcagggatcgt
ttgacagtttcttattctgatgtattgatactaaaactaaacaaaaaaggactcagcgaa
gataaaatcttaaaaatattaaaagaattgcttgattctctatcaaaactgagaatggac
gaagtaaaaagcagttaa
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