Natranaerofaba carboxydovora: ACONDI_03013
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Entry
ACONDI_03013 CDS
T07970
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACONDI_03013 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncd03021
]
ACONDI_03013 (rpoB)
03400 DNA repair and recombination proteins [BR:
ncd03400
]
ACONDI_03013 (rpoB)
Enzymes [BR:
ncd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACONDI_03013 (rpoB)
Transcription machinery [BR:
ncd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACONDI_03013 (rpoB)
DNA repair and recombination proteins [BR:
ncd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACONDI_03013 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
LPD15
Motif
Other DBs
NCBI-ProteinID:
UMZ75385
LinkDB
All DBs
Position
3172522..3176019
Genome browser
AA seq
1165 aa
AA seq
DB search
MPKTVKCGRRERLTFSQIEEVRELPNLIEIQRRSYEWFLEKGIHEMFDDISPIQDFTGGL
VLEFVDYSLGEPKYSVEECKERDVTYSVPLRVKVRLINKETGEVKEQEVFMGDFPLMTEN
GTFIINGAERVIVSQLVRSPGVYYKNEWDTSGRELFSATIIPNRGAWLEFEMNAQNVIFV
RVDRTRKLPVTVLLRALGYGTDEDILRVFGEDARIKATLEKDHTDSYESGVLEIYKRLRP
GEPLNVENAKSLFESLFFDPKRYDFAKVGRYKVNVKLDFYRALGYKAAQRIVKEDTGEIL
INEDEKIEKEHFDILNEAGINRLVVKNKNDEDSVILANGYVDENVKNLTKEDIVASINYL
LNLLDGIGSVDDIDHLGNRRLRCVGELLQNQFRIGLSRMERVIRERMTIQDVDTITPSAL
INIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHH
SHYGRMCPIETPEGPNIGLINSLSTYGRVNELGFIETPYRKVDKENGRVTEEIEYLTAHE
EDKYVIVQANSPLDEDGYFQNDRVIARYRHETLTRSPYEVDYMDVSPKQLVSLATALIPF
LENDDANRALMGSNMQRQGVPLLQSEAPLVGTGVEHRAAYDSGAIVKTLASGVVDYVSAK
EIWIRRDEGGEGRVINGRTGEVFKSDRVNVRDGFDIYKFQKFDRSNQGTCMNQKPVARKG
DRVEEGEIIADGSSTEEGELALGKNVLAAFMPWEGYNYEDAILISEKLVKDDTFSSIHIE
EYEAEARDAKLGPEEITRDIPNVGKDSLKNLDERGIIRSGAEVKAGDILVGKVTPKGETE
LTAEERLLRAIFGEKAREVRDTSLKVPHGESGIVVDVKVFDREDGDELPPGINKLVRVYV
AQKRKISVGDKMAGRHGNKGVIAKILPEEDMPFLPDGTPVEIVLSPLGVPSRMNMGQVLE
THLGWAAKALGMHMSTPVFDGANEQQIFEKLEEAGMPKTGKTPLHDGRTGKQFDNRVTVG
YIYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQ
ELLTVKSDDVVGRVKTYEAIVKGDNVPEPGIPESFKVLIKELSSLGMDVKVINEEEGVVQ
VKDTEGNERVVSLDDMDIDIKGRED
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaccgtgaaatgtgggagaagagaaaggctaactttttcgcaaattgaagag
gttcgagaactacctaacttaattgagatccaaaggagatcttatgaatggtttttagaa
aaaggtatacacgaaatgttcgatgatatttcgccgatacaggattttactggaggtctt
gtattagaatttgtagactattctttaggtgaaccaaaatattcggttgaagaatgtaaa
gagagggatgtgacctattctgttccgttacgagtcaaagtaaggcttattaacaaagaa
actggtgaagtaaaagagcaggaagtatttatgggagatttcccattaatgactgagaat
gggacctttataattaatggtgcagagagggttattgtaagtcagttagtcaggtccccg
ggtgtttattataagaatgagtgggatactagcggaagagaattgttttcagcgacaata
ataccaaaccgtggtgcctggttagaatttgaaatgaacgcccagaatgttatattcgta
agggttgatagaacgagaaagttacctgtgacggttctattaagagcccttgggtatggc
acagatgaagatattttaagggtttttggagaagatgccagaattaaagcaaccttagaa
aaagatcatactgattcatatgaatctggagttttagaaatatacaaaaggcttcgcccg
ggggaaccacttaatgttgaaaatgctaaaagcttattcgagtctttattctttgatcca
aagagatatgactttgctaaagtcggaaggtataaagtaaatgttaagctggacttttat
agggcacttggatacaaggctgcacaaagaattgttaaagaagatacaggcgaaatatta
ataaatgaagacgaaaaaattgaaaaagaacattttgatatattgaatgaagccgggatt
aaccgtcttgttgtaaagaataagaatgatgaagatagtgttattttagccaatggttat
gttgatgaaaacgtgaaaaatcttactaaagaggatatcgtagcttcaattaattatttg
ctgaacttactagacggcattggttctgtagatgatatagatcatttaggaaaccgtagg
cttcgttgtgtaggggagctgctgcagaaccagttcagaattgggctatcaagaatggag
agagttatcagagaaagaatgacaattcaggacgttgatactattactccatcagcacta
attaatatacggcccgttatagcttcaataaaagaattttttggcagcagtcagctttca
cagtttatggatcagactaaccctttagccgaactaacccataagcgtcgtttgagtgcc
cttggccctggtggccttagccgtgaaagagctggcttcgaagtaagagacgttcatcat
tctcactatggaagaatgtgtccgatagagactccggagggaccgaatattggtctgatc
aattctcttagtacttatggtagagttaatgagttaggatttattgaaacaccatataga
aaagtggacaaagaaaacggaagagttacagaagaaattgaatatttaactgcccatgaa
gaagataagtatgtaattgttcaggcaaactctcctttagatgaggatggatattttcaa
aatgacagagttattgcccgttacagacatgagaccttaactagatcaccatatgaagtt
gattatatggacgtatcaccaaagcagcttgttagccttgcaactgcacttattccattt
ttggaaaatgatgatgctaatagggctttgatgggtagtaacatgcagcgtcagggggta
ccactgctacagagtgaggcgcctctagttggaacaggcgttgaacacagagctgcgtat
gactctggagcaattgtcaagacccttgcttcaggggtggttgattatgttagtgcaaaa
gaaatttggatccgtcgtgatgaaggcggtgaaggcagagtaattaatggtagaacgggt
gaagtttttaagagtgacagagtaaatgtaagagatggatttgatatatacaaatttcaa
aaatttgatcggtctaatcagggcacatgcatgaaccaaaagcccgttgcaagaaaagga
gatagagtagaagagggtgagattattgctgacggctcttctacagaagaaggagagcta
gccctagggaaaaatgtattggcagcgtttatgccatgggaaggatataactatgaggat
gcaattttgattagtgaaaagctagtaaaagatgatacattttcatcaatccacatagaa
gaatacgaagcagaagcaagggatgctaagttaggaccagaagagatcacaagagacatt
ccaaatgttggcaaggattcgttaaaaaacctagatgagaggggaataattaggtcaggt
gcggaggttaaggccggtgatatcctggtaggtaaggttacccctaaaggagaaaccgaa
cttaccgctgaggaaaggttgttaagagctatttttggtgagaaagcacgtgaagtaaga
gatacatcactaaaagtgcctcacggcgagtcaggtatcgtggttgatgtaaaagtcttt
gatcgtgaagatggagatgagcttcctcctggaataaacaaattagtacgtgtgtatgtt
gcacagaaacggaaaatatctgtaggtgacaaaatggcaggacgccatgggaataaaggt
gttatagcaaaaattttgccagaggaagatatgcctttcttacctgatggaacacccgtt
gaaatagttttaagtccccttggagttccatcaagaatgaacatgggacaggtgcttgag
actcatcttggttgggcggcaaaagcactaggaatgcacatgtctacccctgtctttgat
ggggctaatgaacagcagatctttgaaaaacttgaggaggccggaatgcccaaaactggg
aaaacacctcttcatgatggaagaacaggaaagcagtttgataacagggttacagttggt
tatatttatatgcttaagctggctcacctggtagatgacaaaatccatgctcgttctact
ggaccttattcccttgttacccaacagccccttggtggaaaggcacagtttggtggacag
cgttttggtgagatggaagtttgggcccttgaggcatatggcgcctcttacacgctgcag
gagttgttgacggttaaaagtgatgatgtcgtagggcgtgttaagacttatgaagccatt
gtaaagggcgataatgtgccagaacctgggataccagaatcgtttaaagtcttaattaaa
gagctttcaagtctgggtatggacgtgaaggtgattaatgaagaagagggagtagttcag
gttaaggatacagaaggcaatgaacgtgtcgtgagtttagatgatatggatattgatata
aaaggtcgtgaggactaa
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